Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0771 ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGGGATTCCTGTGTCACCACCACCAATCAAAAGAAGCCCATGGGGGTGGACCAAGAACTTGTAGAGCTCCTGTGGCAAAATGGCCAGGTTGTGTTGCACAGCCAAACACATAAAAAACCGGTTGTGAATTCAATCGCTCCCAGACCGGTTCTGAAAAATTTTCAGTCAACATTGAGGACTAGTGAGCCATTTGGGAACTCAAGTAACTTGATTCAAGATGATGAGACAGTCTCATGGATCCAGTATTCTCTTGAGGATCCACTGGAACAAGAATTCTGTTCAAACCTTTTATCTGAACTGCCTCCCTGTGAAGTTGAGTCCTATAAGCAAATCAAGCCATTTGAAGAGGGAAAGTTTACCAAATTGGATGCTTCTAGTGCCCCCCCTGTGACTGTAAGTTCACAATCACCTACTATGAAATCCTCCTCTTTTCAGGAATTCTCAGGAATTCCTATACCTGCTCCAACATTCCACGTTTCTGATTCACCTCAGAAAAACAATAATGACTTGGGTGGATCATGTAAGGTCCAAAACTTCTCTCACTTTTCAGTACCCCTTAATGTTTCTTCAACATCGGCTAATGTGcattttagagacaaaattacTGGTAACATGTCAAAAAGTGAGATTAGAGAGTGCTCATTGATGACAGTTGGTTCAAGTTACTGTGGTAGCAATCACATCCCCCATGATCCAGATGCAAGCAGGGCATCAAGCAATGGTGTTTGGACTACTACTTTATCTGCCGAGCCTGAAGCTATTAGAGATGATGTGCCGAGAACAGTTCCTCAGAGTGAGAAAGGGAAATCAGAGATGCTTGAACCAACTGTGACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACTTGTTCCTTTTCTACCAGAAACCAGGGccgaaaaagaaaaggaatggatGTGGAAGAATCTGAGGAGCAAAGTGAGGACACAGAACTTAAATCAGCAGTTGGAAACAAGGCATCTCAACGGGCAGGGTCGGCACGAAGGAACCGTGCTGCTGAAGTGCATAATCTATCGGAAAGGAGACGGAGAGACAGGATCAATGAGAAGATGAGGGCATTGCAACAACTTATCCCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAAGAGGCAATCGAATATTTGAAATCACTTCAGTTACAACTTCAGGTAATGTGGATGGGATCTGGCATGGCACCAATGATGTTTCCGGGAATTCAGCACTATATGTCACAAATGGGTATGGGAATGGCTACACCTACTTTCCCTCCTTCCATTCACAATCTGATGCAATTACCGAGAGTGCCGCTTGATCAGTCTGTATCTGCATCTCAGACACCAAACCAGACATTAATGTGCCAAAATCCTATTTTGGGTGCCTTTAACTACCAAAATCAGTTGCAAAATCCAGCTCTTTCAGAGCAATATGCACGTTACATGGGCTATCATCTTATGCAAAATGCCCCTCAGCCGATGAATGTATTCAGATATGGTCCCCAGGCAGTACAACATAGTCAAACAATGATTACACCCAGCAACAGCAGTGGAAACATGAGTGGAGCAGCAAATATTGATGAGGCTgtgggtggcaaaatggGTTCTTCCGCCTTTAACTAA 1659 0.4237 MNNSVPDWNFGRDSCVTTTNQKKPMGVDQELVELLWQNGQVVLHSQTHKKPVVNSIAPRPVLKNFQSTLRTSEPFGNSSNLIQDDETVSWIQYSLEDPLEQEFCSNLLSELPPCEVESYKQIKPFEEGKFTKLDASSAPPVTVSSQSPTMKSSSFQEFSGIPIPAPTFHVSDSPQKNNNDLGGSCKVQNFSHFSVPLNVSSTSANVHFRDKITGNMSKSEIRECSLMTVGSSYCGSNHIPHDPDASRASSNGVWTTTLSAEPEAIRDDVPRTVPQSEKGKSEMLEPTVTSSSGGSGSSLGKTCSFSTRNQGRKRKGMDVEESEEQSEDTELKSAVGNKASQRAGSARRNRAAEVHNLSERRRRDRINEKMRALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMAPMMFPGIQHYMSQMGMGMATPTFPPSIHNLMQLPRVPLDQSVSASQTPNQTLMCQNPILGAFNYQNQLQNPALSEQYARYMGYHLMQNAPQPMNVFRYGPQAVQHSQTMITPSNSSGNMSGAANIDEAVGGKMGSSAFN 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0771 552 SMART finulus 356 405 IPR011598 GO:0046983
Ssu9g0771 552 CDD bHLH_AtPIF_like 350 413 - -
Ssu9g0771 552 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 529 IPR031066 -
Ssu9g0771 552 Gene3D - 345 406 IPR036638 GO:0046983
Ssu9g0771 552 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
Ssu9g0771 552 MobiDBLite consensus disorder prediction 259 363 - -
Ssu9g0771 552 Pfam Helix-loop-helix DNA-binding domain 354 400 IPR011598 GO:0046983
Ssu9g0771 552 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 414 IPR036638 GO:0046983
Ssu9g0771 552 PANTHER TRANSCRIPTION FACTOR PIF5 1 529 - -
Ssu9g0771 552 MobiDBLite consensus disorder prediction 282 310 - -
Ssu9g0771 552 MobiDBLite consensus disorder prediction 348 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0771 Ssu-Chr9 34058022 34062455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0771 8 520 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 34.799 5.05e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu9g0771 HLH 4.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0771 K16189 - gmx:100784531 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0771 9 34058022 34062455 Ssu9g0771 9 34058022 34062455 ECH
Ssu9g0771 9 34058022 34062455 Ssu6g3348 6 75657964 75661285 PCT