Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0761 ATGACGAGTGCGATCCTCAGAAGATCCTCTTCCGCATTCTCGCGCCGCTTCTTCGCCGCTCTCACCGCCGTCGAGCCAATCCCGCACCACCGCCGCTGGCTCGCCGCCCTTCGGCACGGGGTCTCCGGCGACGTAGCCCGAGCCTTTCACGCGAAATCCGGGCCGCTGAGTTTCCGCTCGTCGCCGGTGTCTCGTGCGGCGCAGTTTGCCGTGGAGCGCGATTACTCCAACGACGACGAAGGCTGCGGCGCGAACCGCGACGAAGGACTCGAGATCGCGAAGCTCGGGATCTCGCCGGAGATCGTGGACGCTCTCGCCAAGAAAGGGATCGCGAAGCTGTTCCCCATTCAGagAGCTGTGCTGGAACCTGCGATGCAAGGACGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACAGGATCATTCAGTTTAATGCTAAGCATGGGCGAGGAAAGGATCCCGTGGCTTTGGTTTTGGCTCCGACTAGAGAACTTGCACGGCAGGTTGAGAAGGAATTCAATGAAGCTGCACCTAACTTGGACATGATCTGTCTTTATGGGGGTATGCCCATCCAGCAACAAATGAGGCAGCTGAATTATGGTGTGGATATTGCAGTAGGCACGCCTGGTCGAATTATTGATCTTCTCAACAGGGGTTCACTGAATTTGAAGGATGTTCAGTTTGTTGTTCTTGATGAAGCAGATCAGATGCTTCAAGTAGGATTTCAAGAAGCTGTGGAGAAGATCTTGGAGAGGTTGTCTCCAAATCGTCAGACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAAGAATATTACCCGCAATTACCTAAACAACCCCCTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGCTGTACTCTATTGTGTCTGATGCGTACACTAGAGCAGGAATTCTTGCACCTCTGATAACAGAACATGCAAATGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGATTATCGTATATGATGGCAAAAAGCCTTAAATGTGAGGCCTTGCATGGAGATATTTCGCAAACTCAGAGGGAAAGAACTCTTGCTGGCTTCAGAAACaacaattttaatgttttagtgGCAACTGATGTTGCTTCACGTGGGCTTGATATTCCCAATGTTGATCTTGTAATACATTATGATCTTCCCAATTCATCAGAGATATTTGTTCATCGATCTGGACGGACGGGCCGTGCTGGGAAGAAAGGAATTGCTATTCTTGTTTACACAGATAACCAATCCCAGGCTGTGAAGACTATTGAGCGTGATGTTGGATGCAAATTTACAGAGCTACCAAAGATTGATGTTCAAGGTGGATCAGCAGAGATGTTTGGTGGCAAGAGTGGTGGTCGATTTGGCCCTTTAGGTGGTATGAAGGATCGTCAATCTGGAGGTACAGGTTTTGGTCGCAGTCCTGGATTTGGCCGTTCTGGGAGTTACAGTAACTCTGGATTTGGCCGTTCTGGCTATGGGAATTCGAGTGAGATGGGAAGGTTTGGTGGACCAAATTCTAGCCGTTTTGGTGGCCTTGGTTCGAGTCAATTAGGAGGGGGGTTTGGAGGATCTTCTGGTAATTCTTCTAGGGAAATGGGTAGATATGGTGGACCAAGCTCTGGTCATTATGGTTCCTATGGCGGTTTTGGAGATTTTGGACCGGGTCAGTCTGGTGCATTTGGTGACAGAAAGTCAAGCCAAACCAGCACCTTTGGTGGTAATTCACGTGGTAGTGGTTTCGATGCTTTTGGGGATAACCCAAATAATGACAGTTACAATAGAGGAAAGTCGTTTTAA 1878 0.4814 MTSAILRRSSSAFSRRFFAALTAVEPIPHHRRWLAALRHGVSGDVARAFHAKSGPLSFRSSPVSRAAQFAVERDYSNDDEGCGANRDEGLEIAKLGISPEIVDALAKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRIIQFNAKHGRGKDPVALVLAPTRELARQVEKEFNEAAPNLDMICLYGGMPIQQQMRQLNYGVDIAVGTPGRIIDLLNRGSLNLKDVQFVVLDEADQMLQVGFQEAVEKILERLSPNRQTLMFSATMPSWIKNITRNYLNNPLTIDLVGDSDQKLADGISLYSIVSDAYTRAGILAPLITEHANGGKCIVFTQTKRDADRLSYMMAKSLKCEALHGDISQTQRERTLAGFRNNNFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGIAILVYTDNQSQAVKTIERDVGCKFTELPKIDVQGGSAEMFGGKSGGRFGPLGGMKDRQSGGTGFGRSPGFGRSGSYSNSGFGRSGYGNSSEMGRFGGPNSSRFGGLGSSQLGGGFGGSSGNSSREMGRYGGPSSGHYGSYGGFGDFGPGQSGAFGDRKSSQTSTFGGNSRGSGFDAFGDNPNNDSYNRGKSF 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0761 625 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 3 553 - -
Ssu9g0761 625 MobiDBLite consensus disorder prediction 587 625 - -
Ssu9g0761 625 SMART ultradead3 109 312 IPR014001 -
Ssu9g0761 625 MobiDBLite consensus disorder prediction 504 519 - -
Ssu9g0761 625 Gene3D - 91 299 IPR027417 -
Ssu9g0761 625 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 468 IPR001650 -
Ssu9g0761 625 CDD SF2_C_DEAD 309 438 - -
Ssu9g0761 625 SMART helicmild6 349 429 IPR001650 -
Ssu9g0761 625 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 295 IPR014001 -
Ssu9g0761 625 Pfam DEAD/DEAH box helicase 114 283 IPR011545 GO:0003676|GO:0005524
Ssu9g0761 625 CDD DEADc 101 296 - -
Ssu9g0761 625 Pfam Helicase conserved C-terminal domain 325 429 IPR001650 -
Ssu9g0761 625 PANTHER RNA HELICASE 3 553 - -
Ssu9g0761 625 MobiDBLite consensus disorder prediction 474 625 - -
Ssu9g0761 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 449 IPR027417 -
Ssu9g0761 625 MobiDBLite consensus disorder prediction 535 561 - -
Ssu9g0761 625 Gene3D - 320 470 IPR027417 -
Ssu9g0761 625 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 90 118 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0761 Ssu-Chr9 33499266 33505569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0761 78 461 Eukaryotic Initiation Factors Gene Family AT3G19760 31.378 4.72e-63 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0761 - - gmx:100815635 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0761 9 33499266 33505569 Ssu6g3336 6 75438384 75440664 PCT