Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0758 ATGGCTTTCTTTAAGCACTTTTCACATGATGTAGCTTCACATGGTGTCGTGGAAGATAAGGGCCAAGGACAGAATGCTGATAGATCTCGTAGGTCAGTAGATAATGGATGTGCTTATGCAACTTCTGgtgaaaaagaatttgatatgaACATGGAGGTACAGTATGAGAGTGGCAGTGAACGAGATGGTAGTAGGCTGCAAAAGGAGGCAGCTGCTGATGATCAAGTTGGTACAAGGGAATCAAACATGGAGAATGTGGGCAGCAAAACAGCTACTGTTGGAAGGTGGGGTACTACATTTTGGAAGGACTGCCAGCCTATGTGCCCTGAGAATGGTTTTGAATCGGGACATGAATCAAAAAGTGGATCAGAGTATAGAAATGCAGATGGGTCTGATGATAATTTGTCAGAAGGCAGAGGGGAAAATTTAGACTCAGAAGATGATGATGGACCAAATGATTCAGGAAAAGGTCCAAGAGGCCATTCGGATATTCCTGCTGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGAGCAAAGTGACTCCTTGCATTACAGAAGTTTTCGCCAACCCACTGGATCAAATTCACGGCCTCAACAGATGTCTACTATTGTCAAAAGGCGTATGCATAAGTCTAGGATTTCAGATGATGCTGAAGATAATGATGGTGATGCTGACTATGAAGAAGAGGATGAAGCGGATGAAGATGATCCTGATGATGCAGACTTTGAGCCCTCAACAAGTGTTCGTGCTGCAAATAAGGATAAAGATTGGGAAAGTGAAGACTCGGATAAAGCTGATGATAGTGATGTGGAAATAGATGTCTCAGATAAAGAAGATTCATACTTTGATAAGAAGGCAAAGGGAAGGCAGCGAGGTAAAATCGGACAAAGTATAAGATCTTCCAGAGATCACAAATATACTGCTTCTAGTCAACAAAGAAGAGTTAAACCATcttttgatgatgaagatgatgagtCTACAGCAGATGATTCTGACAGTGAGAGTGACGAGgattttaaaagcataaaaaagcGAGGTGTGCATGTACGCAAGAATAATAGTCGTTCAGCTGCACCCACTAGTTTTTCTATGTGCAACAGTGAGATTCGCACTTCTAGTAGGACAGTTAGGAAAGTATCATATGTTGAAAGTGAAGAAAGTGAAGAAGCTGatgaagggaagaagaagaaatcccAAAAGGAAGAAATTGAAGAGGATGATGGGGATTCCATTGAAAAGGTGCTCTGGCATCAGCCAAAGGGCCTGGCTGCAGAGGCTCAAAGGAATAATAGATCCACAGAACCTGTTTTAATGAGTCACTTGTTTGATTCTGAACCTAATTGGAATGATATGGAATTCTTGATAAAATGGAAAGGCCAGTCACATTTGCACTGTCAGTGGAAGTCTTTTGTTGAGTTACAAAATCTCAGTGGTTTTAAGAAAGTTTTGAATTATACAAAGAAAGTGACAGAGGATGTCAGGTACAGGATGACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAGAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATTAGCAAAGATAACTCTGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGTGACTTGGGAGAAGGACGTTGATATTGCTTTTGCTCAACATGCTATAGATGAGTATAAGGCTCGTGAAGCTGCAATGGCAGTTCAAGGAAAGATGGTAGATCTTCAGCGTAAAAAGAGCAAAGCAAGTTTGCGGAAACTTGATGAGCAGCCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTTTACAGAATGCCCAGCAAATCCATGGCCCTTTTCTTGTAGTTGTCCCATTGTCTACCTTATCAAACTGGGCCAAAGAGTTCAGGAAGTGGCTTCCTGATATGAATATTATAGTCTATGTTGGTACTCGCGCAAGTAGAGAGGTTTGCCAACAATATGAATTTTACAATGATAAAAAGGCTGGCAGGCCTACAAAATTCAATGCACTTTTGACTACATATGAAGTAGTTCTGAAGGATAAGGCTGTTCTCTCCAAGATCAAGTGGAACTATGTAATGGTAGATGAGGCTCATAGACTAAAAAATAGTGAGGCACAATTATACACAACACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTGTCACTGGTACTCCACTACAAAATAGTGTTGAAGAGCTATGggcTTTGCTCCACTTTCTTGATTCTGTTAAGTTTAAGAGCAAGGATGACTTTGTTCAAAACTATAAGAATCTGAGTTCATTCAATGAGAATGAGcttGCTAATCTTCATATGGAATTGAGGCCTCATATGCTTCGAAGAGTGATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGTATTCTTAGGGTTGAAATGTCTCCTCTTCAGAAGCAGTATTATAAGTGGATTTTGGAACGCAACTTTCATGATTTGAACAAAGGAGTTAGAGGGAATCAGGTTTCTCTTCTAAATATTGTGGTAGAATTGAAGAAGTGCTGTAACCATCCCTTTCTGTTTGAAAGTGCTGACCATGGTTATGGTGGGGACTCTGTAAGTAGTGACAGCAGTAAATTAGAAAGAATTGTCTTTAGCAGTGGCAAGCTTGTCATACTTGATAAGCTGCTTGTCAGATTGCATGAAACAAAGCATCGTGTCCTGATTTTTTCTCAGATGGTTAGGATGTTAGATAGACTAGCAGAGTACATGTCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGTAGTACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGAACCAGGTAGTGATGATTTTTGCTTCCTTCTTTCAACGCGAGCAGGAGGTTTGGGTATCAACCTTGCCACAGCAGACACTGTTATAATATTTGATTCAGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATCGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGTGCTAAGAAGAAGATGGTTCTTGACCACTTGGTGATTCAAAAGCTAAATGCAGAGGGTAGATTGGAGAAGAAAGAAGCCAAAAAGGGGGGAAGTTATTTTGACAAAAATGAGCTATCAGCGATCTTAAGGTTTGGAGCAGAGGAGCTTTTTaaggaagaaagaaatgatgaaGAAAGCAAGAAACAACTCTTAAGTATGGACATAGATGAGATTCTTGAAAGAGCGGAGAAGGTTGAGGAGAAGGAAAATGAGGGTGAACAAGCACATGAATTATTAAGTGCCTTTAAGGTTGCTAATTTCTGTAacgatgaagatgatggaagtTTCTGGAGTCGTTGGATAAAGCCTGATGCTGTCGCTCAAGCAGAGGAAGCTCTAGCTCCACGTGCTGCAAGGAATATTAAAAGCTATGCAGAGGATAACCAATCTGAAAGAAGcagtaaaaggaaaaagaaggaaagtgaACTACCTGAGCGAGTTCAAAAACGGCGGAAAGCAGGGAATTCAGCTCCTGCAACACCGATGATTGATGGAGCTTCAGCCCAAGTGAGAAGCTGGTCGCATGGGAATTTGTCTAAAAAAGATTCACTCCGTTTTTCTCGCTCAGTTATGAAATTTGGGAATGAGAGCCAAATCAACTTAATTGCTGCGGAGGTTGGTGGTGCAGTAGGAGCAGCCCCAGCTGAAGCACAAACTGAACTCTTCAATGCTCTAATTGATGGCTGTACAGAAGCAGTCGAACTTGGAAGTCTGGATCCCAAGGGGCCTTTGTTGGATTTCTTTGGTGTCCCAGTAAAGGCAAATGATTTACTTACCCGTGTTCAAGGACTTCAACTCCTGGCAAAGCGCATTAGTTGGTATGAAGATCCCATTGCACAATTCCGCGTCTTAacatatctcaaactttcaAATTGGTCGAAAGGTTGTGGGTGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAGTGTATTATCATGGATTTGGTAATTGGGAAAATATAAGATTAGATGAAAGGCTTGGTCTTACAAAAAAATTGCACCAGTGGAACTTCAACACCATGAAACTTTCTTGCCACgagctccaaatttga 4305 0.3912 MAFFKHFSHDVASHGVVEDKGQGQNADRSRRSVDNGCAYATSGEKEFDMNMEVQYESGSERDGSRLQKEAAADDQVGTRESNMENVGSKTATVGRWGTTFWKDCQPMCPENGFESGHESKSGSEYRNADGSDDNLSEGRGENLDSEDDDGPNDSGKGPRGHSDIPAEEMLSDEYYEQDGEEQSDSLHYRSFRQPTGSNSRPQQMSTIVKRRMHKSRISDDAEDNDGDADYEEEDEADEDDPDDADFEPSTSVRAANKDKDWESEDSDKADDSDVEIDVSDKEDSYFDKKAKGRQRGKIGQSIRSSRDHKYTASSQQRRVKPSFDDEDDESTADDSDSESDEDFKSIKKRGVHVRKNNSRSAAPTSFSMCNSEIRTSSRTVRKVSYVESEESEEADEGKKKKSQKEEIEEDDGDSIEKVLWHQPKGLAAEAQRNNRSTEPVLMSHLFDSEPNWNDMEFLIKWKGQSHLHCQWKSFVELQNLSGFKKVLNYTKKVTEDVRYRMTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIPEYLVKWQGLSYAEVTWEKDVDIAFAQHAIDEYKAREAAMAVQGKMVDLQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKKAGRPTKFNALLTTYEVVLKDKAVLSKIKWNYVMVDEAHRLKNSEAQLYTTLSEFSTKNKLLVTGTPLQNSVEELWALLHFLDSVKFKSKDDFVQNYKNLSSFNENELANLHMELRPHMLRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSVSSDSSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDRLAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNEPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKQLLSMDIDEILERAEKVEEKENEGEQAHELLSAFKVANFCNDEDDGSFWSRWIKPDAVAQAEEALAPRAARNIKSYAEDNQSERSSKRKKKESELPERVQKRRKAGNSAPATPMIDGASAQVRSWSHGNLSKKDSLRFSRSVMKFGNESQINLIAAEVGGAVGAAPAEAQTELFNALIDGCTEAVELGSLDPKGPLLDFFGVPVKANDLLTRVQGLQLLAKRISWYEDPIAQFRVLTYLKLSNWSKGCGWNQIDDARLLLGVYYHGFGNWENIRLDERLGLTKKLHQWNFNTMKLSCHELQI 1434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0758 1434 MobiDBLite consensus disorder prediction 149 168 - -
Ssu9g0758 1434 MobiDBLite consensus disorder prediction 117 141 - -
Ssu9g0758 1434 MobiDBLite consensus disorder prediction 188 208 - -
Ssu9g0758 1434 Gene3D - 609 848 IPR038718 -
Ssu9g0758 1434 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 111 1417 - -
Ssu9g0758 1434 MobiDBLite consensus disorder prediction 15 36 - -
Ssu9g0758 1434 CDD CD2_tandem 524 580 - -
Ssu9g0758 1434 Coils Coil 1078 1098 - -
Ssu9g0758 1434 SUPERFAMILY Chromo domain-like 410 493 IPR016197 -
Ssu9g0758 1434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 839 IPR027417 -
Ssu9g0758 1434 SMART chromo_7 411 494 IPR000953 -
Ssu9g0758 1434 SMART chromo_7 524 583 IPR000953 -
Ssu9g0758 1434 SMART helicmild6 964 1048 IPR001650 -
Ssu9g0758 1434 MobiDBLite consensus disorder prediction 222 245 - -
Ssu9g0758 1434 CDD SF2_C_SNF 925 1059 - -
Ssu9g0758 1434 ProSiteProfiles Chromo and chromo shadow domain profile. 413 492 IPR000953 -
Ssu9g0758 1434 Pfam SNF2-related domain 637 906 IPR000330 GO:0005524|GO:0140658
Ssu9g0758 1434 MobiDBLite consensus disorder prediction 112 415 - -
Ssu9g0758 1434 Coils Coil 1132 1159 - -
Ssu9g0758 1434 ProSiteProfiles Chromo and chromo shadow domain profile. 526 590 IPR000953 -
Ssu9g0758 1434 Gene3D - 528 580 - -
Ssu9g0758 1434 Gene3D - 400 526 - -
Ssu9g0758 1434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 842 1124 IPR027417 -
Ssu9g0758 1434 Gene3D - 1345 1429 - -
Ssu9g0758 1434 MobiDBLite consensus disorder prediction 54 90 - -
Ssu9g0758 1434 Pfam Helicase conserved C-terminal domain 935 1048 IPR001650 -
Ssu9g0758 1434 Gene3D - 849 1079 IPR027417 -
Ssu9g0758 1434 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 630 802 IPR014001 -
Ssu9g0758 1434 Pfam Chromo (CHRromatin Organisation MOdifier) domain 527 581 IPR023780 -
Ssu9g0758 1434 MobiDBLite consensus disorder prediction 58 75 - -
Ssu9g0758 1434 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 111 1417 - -
Ssu9g0758 1434 SMART ultradead3 614 813 IPR014001 -
Ssu9g0758 1434 MobiDBLite consensus disorder prediction 357 382 - -
Ssu9g0758 1434 MobiDBLite consensus disorder prediction 279 325 - -
Ssu9g0758 1434 MobiDBLite consensus disorder prediction 383 415 - -
Ssu9g0758 1434 MobiDBLite consensus disorder prediction 1205 1258 - -
Ssu9g0758 1434 SUPERFAMILY Chromo domain-like 505 581 IPR016197 -
Ssu9g0758 1434 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 938 1089 IPR001650 -
Ssu9g0758 1434 CDD CD1_tandem 411 491 - -
Ssu9g0758 1434 MobiDBLite consensus disorder prediction 1209 1236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0758 Ssu-Chr9 33385705 33412056 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0758 640 1075 RAD5 or RAD16-like Gene Family AT1G02670 26.275 1.51e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu9g0758 SNF2_N 1e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0758 K11367 - gmx:100808039 2241.08