Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0747 ATGACGACGACTTCGGATCTTAATAGAACTGGTCCCGTGGAAAGAGACATTGAGCAGGCTGTTACTGCTTTAAAAAAAGGGGCTTACTTGCTCAAGTATGGAAGAAGAGGGAAGCCCAAGTTTTGTCCCTTTCGGCTTTCCAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCGCCTTAAACTAACTAATGTTTCTAGGATTATATCCGGACAACGTACgccaATCTTTCAAAGATACCCGCGGCCTGAGAAGGAATACCagtctttttctctcatttacaaTGATAGATCACTAGACTTGATTTGTAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGATTGAAAGCATTAATTTCACGCAGCCATCACCGGAAGTGGAGACCAGAGTCAAGAAGTGATGGTATTCCATCTGAAGCTAATAGTCCTCGGACATACACTAGAAGAAGTTCTCCCTTGAATTCTCCATTTGGTAGTAATGAAAGCTTGCAAAAGGATAGTGGGGATCATCTTCGCCTTCATAGCCCATATGAAAGCCCCCCTAAGAATGGTTTGGATAAAGCATTTTCGGATGTGATTTATTATCCTATTCCTTCAATGGGTTTCTTCCCTCCAGATTCTGCCAGTGGTTCACTCCACTCTGTGTCATCAGGAGGATCAGATAGCATGCATGGTCAAATGAAGACAATGCCTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCATCTAGCCAGGGTTCTGGtcatgatgatggtgatgcCTTGGGGGATGTTTTTATTTGGGGGGAAGGCACTGGTGATGGTGTACTGGGTGGTGGGGCTCACCAAGTTGGGAGTAATTTTGGTGTCAAGATGGATTCTCTGTTGCCCAAAGCATTGGAATCAGCAGTAGTTCTTGATGTACAGAATATTGCTTGTGGTGGGAAACATGTGGCCTTGGTGACCAAACAAGGGGAAATTTTTTCCTGGGGGGAAGAATCAGGAGGAAGGCTTGGGCATGGAGTTGATTCTGATGTTCCCCATCCAAAGCTTATTGAATCtctaaataatacaaatatcgAATTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTACACATGGGGTGATGGCACTTACAATTATGGTCTTCTGGGCCATGGAAATCAGGTGAGCCACTGGGTCCCCAAAAGAGTAAATGGCCCTTTGGAAGGCATACATGTTTCATCTATTTCTTGTGGTCCATGGCACACTGCTGTTGTAACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGAAAAAGTGTTTCCTTGCCTAGGGAAATAGAGTCCCTGAAGGGTCTTCGTACTGTGCAGGCTGCTTGTGGTGTTTGGCATACCGCTGCTGTTGTGGAGGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACATGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAATCAAAACTTGTTCCAACCTGTGTTGTGTCTCTTGTTGAACCTAATTTTTGTCAAGTTGCTTGTGGTCATAGTATGACTGTTGCACTTTCTAGATCAGGCCATGTCTATACAATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATACTCAAGCTGATGGGAAGCTACCAACCCGTGTCGAAGGAAAGCTTTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACGTGGGGGAAGGGTGCAAATGGTCGTTTAGGCCATGGGGATACTAATGATAGAAACTCCCCAACATTAGTAGAAGCTCTGAAAgacaaacaagtaaaaagtaTTGCTTGTGGTACAAATTTCACTGCAGCCATATGCCTGCATAAGTGGGTATCTGGCGTTGACCAGTCCATGTGTTCTGGCTGCCGTCTTCCATTCAATTTCAAAAGGAAACGCCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGCAGTAGTAAGAAATCTGTTAAGGCTTCAATGGCACCAAATCCCAACAAACCTTATCGTGTCTGtgataattgttttaataaaataaggaaaactaCAGAAACCGATTCATCTCAGTCTTCTATGAGCAGGAGAGGAAGCATTAATCAGGGGTCACTTGAGTTTATTGGTAAGGATGATAAATTGGATTCCAGATCTCATAATCAACTTGCCAGGTTTTCTTCAATGGAATCCTTGAAACAAGTGGACAGCAGAtcttcaaagaaaaacaaaaagttggAATTCAACAGTAGCCGTGTCTCGCCTGTTCCAAATGGAGGTTCACAATGGGGAGCAATGAATATTACTAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCCCCAATATCTAGACGACCTAGTCCACCTCGTTCAACTACTCCAACCCCAACACTGGGGGGACTTGCATCCCCAAAGATAGTTGTGGATGATGCTAAGAGAACCAATGATAGCCTCAGTGAGGAGGTTATTAAATTAAGATCGCAGGTGGAAAACCTGACTCGGAAAGCCCAGCTTCAAGAAGTCGAGTTGGAAAGAACAACTAAACAGTTAAAAGAAGCAATAGCAATTGCAAGTGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCCGAGAGGCTGCCTGTAGGAGTATCTAGGAATGTCAGATCACCCCCCTCTCTTGCTTCCTTTGGCTCAAATCCTGGTTCCAATGACCTTACCAATGCTTCCTTTGATCGATTGAATATTCAAGCAACAAGCCCAGAATCAGACTCAACTGGATCTAATAACCAGTTACTTTCAAATGGATCAAGCGCCATCACCAACCGGAGTGCAGGTCACATTAAACACAGTCAATCAGATGCAACTAGCAGAAATGGGAGCAAAACAAAGGATAATGAAACTGAATGGGTTGAGCAAGATGAACCTGGTGTATACATTACTCTCACCTCCCTACCCGGAGGTGTAATTGATCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCTGAGAATCGGGCAAGAGTGTATGAACAGTACAACGTGCGCTTGATTGACAAGTCGACCATTGGTGTTGGGAGTGAGGACCTGGCTCATTGA 3303 0.4239 MTTTSDLNRTGPVERDIEQAVTALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKRLKLTNVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRPESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKAFSDVIYYPIPSMGFFPPDSASGSLHSVSSGGSDSMHGQMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGAHQVGSNFGVKMDSLLPKALESAVVLDVQNIACGGKHVALVTKQGEIFSWGEESGGRLGHGVDSDVPHPKLIESLNNTNIEFVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVVSLVEPNFCQVACGHSMTVALSRSGHVYTMGSCVYGQLGNTQADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTNDRNSPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMAPNPNKPYRVCDNCFNKIRKTTETDSSQSSMSRRGSINQGSLEFIGKDDKLDSRSHNQLARFSSMESLKQVDSRSSKKNKKLEFNSSRVSPVPNGGSQWGAMNITKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLASPKIVVDDAKRTNDSLSEEVIKLRSQVENLTRKAQLQEVELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGVSRNVRSPPSLASFGSNPGSNDLTNASFDRLNIQATSPESDSTGSNNQLLSNGSSAITNRSAGHIKHSQSDATSRNGSKTKDNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRLIDKSTIGVGSEDLAH 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0747 1100 Pfam Transcription factor BRX N-terminal domain 913 946 IPR027988 -
Ssu9g0747 1100 ProSiteProfiles BRX domain profile. 1027 1082 IPR013591 -
Ssu9g0747 1100 MobiDBLite consensus disorder prediction 761 800 - -
Ssu9g0747 1100 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 471 481 IPR000408 -
Ssu9g0747 1100 Pfam FYVE zinc finger 653 719 IPR000306 GO:0046872
Ssu9g0747 1100 CDD PH_PLC_plant-like 15 125 - -
Ssu9g0747 1100 CDD FYVE_like_SF 662 715 - -
Ssu9g0747 1100 PRINTS Chromosome condensation regulator RCC1 signature 435 449 IPR000408 -
Ssu9g0747 1100 PRINTS Chromosome condensation regulator RCC1 signature 328 344 IPR000408 -
Ssu9g0747 1100 PRINTS Chromosome condensation regulator RCC1 signature 596 617 IPR000408 -
Ssu9g0747 1100 PRINTS Chromosome condensation regulator RCC1 signature 419 435 IPR000408 -
Ssu9g0747 1100 PRINTS Chromosome condensation regulator RCC1 signature 538 556 IPR000408 -
Ssu9g0747 1100 PRINTS Chromosome condensation regulator RCC1 signature 378 394 IPR000408 -
Ssu9g0747 1100 PRINTS Chromosome condensation regulator RCC1 signature 309 322 IPR000408 -
Ssu9g0747 1100 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 657 719 IPR017455 -
Ssu9g0747 1100 MobiDBLite consensus disorder prediction 785 800 - -
Ssu9g0747 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 601 652 IPR000408 -
Ssu9g0747 1100 SUPERFAMILY RCC1/BLIP-II 263 654 IPR009091 -
Ssu9g0747 1100 SMART fyve_4 651 720 IPR000306 GO:0046872
Ssu9g0747 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 549 600 IPR000408 -
Ssu9g0747 1100 Gene3D - 389 489 IPR009091 -
Ssu9g0747 1100 Gene3D - 213 388 IPR009091 -
Ssu9g0747 1100 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 17 1086 - -
Ssu9g0747 1100 Gene3D - 16 132 IPR011993 -
Ssu9g0747 1100 SUPERFAMILY PH domain-like 16 124 - -
Ssu9g0747 1100 MobiDBLite consensus disorder prediction 131 187 - -
Ssu9g0747 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 497 548 IPR000408 -
Ssu9g0747 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 665 726 IPR013083 -
Ssu9g0747 1100 MobiDBLite consensus disorder prediction 830 857 - -
Ssu9g0747 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 326 377 IPR000408 -
Ssu9g0747 1100 Pfam Transcription factor regulating root and shoot growth via Pin3 1026 1081 IPR013591 -
Ssu9g0747 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 378 432 IPR000408 -
Ssu9g0747 1100 MobiDBLite consensus disorder prediction 943 1031 - -
Ssu9g0747 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 264 325 IPR000408 -
Ssu9g0747 1100 MobiDBLite consensus disorder prediction 140 169 - -
Ssu9g0747 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 496 545 IPR000408 -
Ssu9g0747 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 433 481 IPR000408 -
Ssu9g0747 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 377 429 IPR000408 -
Ssu9g0747 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 548 597 IPR000408 -
Ssu9g0747 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 602 649 IPR000408 -
Ssu9g0747 1100 Pfam Regulator of chromosome condensation (RCC1) repeat 326 374 IPR000408 -
Ssu9g0747 1100 Coils Coil 862 938 - -
Ssu9g0747 1100 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 433 484 IPR000408 -
Ssu9g0747 1100 SUPERFAMILY FYVE/PHD zinc finger 653 723 IPR011011 -
Ssu9g0747 1100 MobiDBLite consensus disorder prediction 948 1018 - -
Ssu9g0747 1100 Pfam Unstructured region between BRX_N and BRX domain 955 1024 - -
Ssu9g0747 1100 Pfam Pleckstrin homology domain 18 124 IPR001849 -
Ssu9g0747 1100 Gene3D - 494 664 IPR009091 -
Ssu9g0747 1100 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 17 1086 - -
Ssu9g0747 1100 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 419 429 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0747 Ssu-Chr9 32928237 32942095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0747 922 1091 Major Intrinsic Protein MIP AT1G31880 35.912 6.02e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0747 - - gmx:100791947 2038.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0747 9 32928237 32942095 Ssu6g3327 6 75314267 75327586 PCT