Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0745 ATGGAAGAAGCAACTGAGTTGCAAtcagaagaaaataaagtgtctatggagaaaaataagaaaaggaggCTCAAAACACCTGCCCAGCTTTTGGCCTTGGAGAATTTTTATAACGATCACAAATATCCCACAGAGGAAATGAAATCAGAACTAGCTGATGAGTTAGAGTTAACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAaggttaaaagataaaaaattgttgaatgatGAAGTATGTGCTAATGGACGACAAGATCGTTCGAGTGGTGCCATCCAGGATCGTGGCAGTGGTCTAGTGCAGGATTCATGCGGAAGCACTAAACATGGTGATTATAGGTATCTGGATCCCAAAGAGGTTGAGAGTCATGGCCTCTATAACCATGAATTTTCAGCTGCAGATATGACCTATAGACACAGGAATCATCATTATACTGAAAATGATAGTGCAACAGATAACACATCATCTGAGAATAGCTCATCTTTGCAAGAACGATTGCTTCCTCAAGGACAGGATCCATATGATATGGAGACTTCTAGACATCTAACACCTAACAGAACTCTGCCGCCCCTAAATCCCAAGGGTGCAAATAACATGGGATATAAACCATCTGGATATTTGAAAGTGAAGGGAGAGATTGAACATGCTGCTATTACTTCTGTTAAAAAGCAACTAGGAAAGCATTATCGGGAAGACGGTCCACTACTTAGTGTTGAATTTGATACAATTCCTCCAGAGGCATTTGAATGTCAAATTGCAGATCTAGCTAATGAAGCATACTATGTTGCAAATCCTGCTCTTCCAAATTCTCCAGATGTCTCTGCTGTGAAAAGACAATCTAGTCTTTCTAGATatgattcatattttactaaattaagtTCCCAAGATTCACATATGGAAGGAGGTGACTTTGGCTCCTTGCATGATTGTGATTTCCAGGATAAGAAACCTCGCCAGCATATAAATCAAAGGCCAACTTTTCACAGTTTGACCAATCCTTTGCCTCGCAAGAACTCTTCCCAGGATTTGTATGTAGACTCTGTTGGGGAAGCATCTGCTTATAATAGCACTAAAAATCATAGAATGGGTACTAAGCATGGTTTTGAGGGGATGAGATCTGATTCTGCTTCTAACCCTAGTGATCACTATGAAGAGAATAATAACCTTGCAGTTAAGAAGACAGATTCACTGCTTCATGGCTGTGATAACAGCAATCTGAAGAATGTACAACGGAGTGAATATGTAAAATCTAAGCCTTCAAATTCAATACATAAGTCTCAAATTTACTTGGATACTGAAGAAAGAAGGCTTAATAAAAAGATGGCAAAGGAAGAGAAGTTTAATGGGGATAGAAAGGTAAAAAAACAATATCATGATCCAGATGGAGTTAGTGTGCTTTCAAATGAAAGGATGGCTGCAAAGCGAGCTAAAGTTGATCCACTTGAAGAATATGATGTTAAACAAACACCTGTTGTTGAGCTGGAACCAAGAAAAAGTCAAAGGTCTGCTGTGGAGATACCATCTAGCTTTAGTGAGGATGAAACTGCTGAAACCAGTTCCTCAGTGGATTAA 1578 0.3733 MEEATELQSEENKVSMEKNKKRRLKTPAQLLALENFYNDHKYPTEEMKSELADELELTEKQISGWFCHRRLKDKKLLNDEVCANGRQDRSSGAIQDRGSGLVQDSCGSTKHGDYRYLDPKEVESHGLYNHEFSAADMTYRHRNHHYTENDSATDNTSSENSSSLQERLLPQGQDPYDMETSRHLTPNRTLPPLNPKGANNMGYKPSGYLKVKGEIEHAAITSVKKQLGKHYREDGPLLSVEFDTIPPEAFECQIADLANEAYYVANPALPNSPDVSAVKRQSSLSRYDSYFTKLSSQDSHMEGGDFGSLHDCDFQDKKPRQHINQRPTFHSLTNPLPRKNSSQDLYVDSVGEASAYNSTKNHRMGTKHGFEGMRSDSASNPSDHYEENNNLAVKKTDSLLHGCDNSNLKNVQRSEYVKSKPSNSIHKSQIYLDTEERRLNKKMAKEEKFNGDRKVKKQYHDPDGVSVLSNERMAAKRAKVDPLEEYDVKQTPVVELEPRKSQRSAVEIPSSFSEDETAETSSSVD 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0745 525 MobiDBLite consensus disorder prediction 483 502 - -
Ssu9g0745 525 SUPERFAMILY Homeodomain-like 18 83 IPR009057 -
Ssu9g0745 525 MobiDBLite consensus disorder prediction 359 386 - -
Ssu9g0745 525 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Ssu9g0745 525 MobiDBLite consensus disorder prediction 483 525 - -
Ssu9g0745 525 MobiDBLite consensus disorder prediction 146 201 - -
Ssu9g0745 525 SMART HOX_1 18 80 IPR001356 GO:0003677
Ssu9g0745 525 CDD homeodomain 20 75 IPR001356 GO:0003677
Ssu9g0745 525 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Ssu9g0745 525 MobiDBLite consensus disorder prediction 178 194 - -
Ssu9g0745 525 MobiDBLite consensus disorder prediction 504 525 - -
Ssu9g0745 525 Gene3D - 8 91 - -
Ssu9g0745 525 MobiDBLite consensus disorder prediction 88 110 - -
Ssu9g0745 525 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 525 - -
Ssu9g0745 525 MobiDBLite consensus disorder prediction 7 22 - -
Ssu9g0745 525 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 525 - -
Ssu9g0745 525 MobiDBLite consensus disorder prediction 1 22 - -
Ssu9g0745 525 MobiDBLite consensus disorder prediction 88 106 - -
Ssu9g0745 525 MobiDBLite consensus disorder prediction 150 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0745 Ssu-Chr9 32826390 32832477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0745 3 525 Homeobox Transcription Factor Family AT4G03250 38.462 9.26e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Ssu9g0745 Homeodomain 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0745 - - gmx:100812697 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0745 9 32826390 32832477 Ssu6g3326 6 75294276 75300054 PCT