Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0741 ATGTGGCCGGGGGCATCCAGGTCATTCAACTACAACCTGGCGCCTCACCACGACATCTTCGTGGTGGCACCCGCGTCCTccttccaccaccaccacaacgaCGCCGTTTTGTCCGACCCGAACAGCAGCAACAACAGTGGTTCCAACCCCGCCACTGCCCTCGGCGTCAACGTCTTCCCTCTCCTCACCGCCGCGCCGTGCCTCGCGCCTCCGAACGTGGGCATGGACAGCGAGGGCATGATGGGACACAACAGCAACCACCGCAACAGAATTCAGTTATGGCAAGGGCAAGAATCTCCCTCGCAACAACACGGTCACGCCGAGGGCGTGATGGGGAGTAATAACAATAACCACCGCAACAGAATTCAGTTATGGCAAGATCAAGAGTCTCCGCCGCCACATCAGCAACACGGGCACGTGGAACGCGACGCGAGCGGGGAGGGGGGTTTGGGGGGGAGCACGTGCCAGGACTGTGGGAACCAGGCGAAGAAGGATTGTAGTCACAGGAGGTGCAGGACGTGTTGCAAGAGTAGGGGGTATCATTGTGCCACGCACGTGAAGAGCACGTGGGTGCCGGCGGCGAGGAGGAGGGAGCGGCAGCTCATGGCGGTGGCCGCGGCGGCGGTTGGGTCGAGTGGGGCCACTTCCGGCGCCAAGAAAGCTAGGCTCGTTGGTTCCCAGACTACTACTACTTCGCATACTTCCACGTCTAATAATACCACTCCTCCCAGGAGTTTCGACACGGGTTCTAGCCACCAAGATGTTGGTTTCAAGGAGTCATTACCTTGTCAAGTGCGTGCGCCGGCGTTGTTCAAGTGTGTTAGGGTGACGGCAGTGGATGATGGGGAAGATGAATATGCGTATCAGGCTGTTGTGAAGATTGGTGGCCATGTGTTCAAAGGCATTCTTTATGATCAAGGGGTTGAGGATAGAGATGTGTATCCCAATTTATCTGAGCTACATTTGGGTGGTTGTGGAAGTGGTGGTGGAAATGTTGGAAGTGATGGGGCTGGTGGTGGTAGAAATGGGGTGTCATCTTCATCTCCAATGGTGGATCCTTCTGATGTCTATGCAGCTTCAGGTGGAGGGTTTCTTGGAGGTTCATCAAACTATGAATATTTGTTGGAGGATGAATTGCCTGCTCGCTGCTGTTGCTATTATATAGTATTATTGAGAAGCTGCAGATGTGTGTCACTTGTTTTTTATGGACAGAATCTAATTAGCCGCTATTTATGA 1236 0.5332 MWPGASRSFNYNLAPHHDIFVVAPASSFHHHHNDAVLSDPNSSNNSGSNPATALGVNVFPLLTAAPCLAPPNVGMDSEGMMGHNSNHRNRIQLWQGQESPSQQHGHAEGVMGSNNNNHRNRIQLWQDQESPPPHQQHGHVERDASGEGGLGGSTCQDCGNQAKKDCSHRRCRTCCKSRGYHCATHVKSTWVPAARRRERQLMAVAAAAVGSSGATSGAKKARLVGSQTTTTSHTSTSNNTTPPRSFDTGSSHQDVGFKESLPCQVRAPALFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGILYDQGVEDRDVYPNLSELHLGGCGSGGGNVGSDGAGGGRNGVSSSSPMVDPSDVYAASGGGFLGGSSNYEYLLEDELPARCCCYYIVLLRSCRCVSLVFYGQNLISRYL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0741 411 Pfam Domain of unknown function (DUF702) 152 309 - -
Ssu9g0741 411 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 154 196 IPR006510 -
Ssu9g0741 411 MobiDBLite consensus disorder prediction 221 253 - -
Ssu9g0741 411 MobiDBLite consensus disorder prediction 215 253 - -
Ssu9g0741 411 MobiDBLite consensus disorder prediction 96 133 - -
Ssu9g0741 411 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 17 370 IPR007818 GO:0003700|GO:0006355
Ssu9g0741 411 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 261 308 IPR006511 -
Ssu9g0741 411 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 17 370 - -
Ssu9g0741 411 MobiDBLite consensus disorder prediction 96 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0741 Ssu-Chr9 32571105 32575633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0741 155 356 C2H2 Transcription Factor Family AT5G12330 61.722 1.20e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ssu9g0741 DUF702 4.8e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0741 - - vra:106753021 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0741 9 32571105 32575633 Ssu6g3323 6 75191288 75193901 PCT