Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu9g0739 | ATGACTTCCTCACTTGTGAAGATCCAAGGCGAACAGGTCCTCTCCAACGATTTTCAGGACCTCTCAATCAAAGATCTGAGTGAGAAGGGGAGTGAGGCAGAGATTCACGAGGTGGGGTATGGAGGCCATGGGGGAATCTGTGCTATTTGCTTGGATAAGATAGTGCTGCAGGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCTTACTGTGTAACATGCATCCTTCAGTGGGCTACATACCGTGAGAAAGTTACCTGCCCTCAGTGTAAACATCCATTTGAGTTCCTCAATGTCCACCGCTCACTTGATGGCAGCATTCAAGATTACATGTTTGAGGAAAGTGTTTGCCTGCTACTTCGGGCCTCATGGTTCAAACCTTTATCTGTTGAAGAACATGTGGATCATGAAGATGCATTTGAAGACCTGGAAGATTACTATCAGTACGAGGATGAGGATGATGATATGGATGAATCTTACTATGGTGGTTCGTCAAGTTTTCGCATTGGCAACCGTAGATGGGGAGATAATGGTTATGTCAGGGCTGGTCGTCAAGAAGCTCGGCCAGTCCATCGTGTGAACTTCCAGGATTCAGGAGCCAGTTCATCCTGCGAGCCGAAGAAGAGAGAGGCTGGGAAAAGTACCACAGGCAGAAGGGCAAAGAGGGCACAGAAAAGGGAAGCTGCTGACAAGGCAGCTGAAGCAAAGCATCAGCAGCATTTGATAAGGTTGGGTAGGAAgtga | 741 | 0.4737 | MTSSLVKIQGEQVLSNDFQDLSIKDLSEKGSEAEIHEVGYGGHGGICAICLDKIVLQETALVKGCEHAYCVTCILQWATYREKVTCPQCKHPFEFLNVHRSLDGSIQDYMFEESVCLLLRASWFKPLSVEEHVDHEDAFEDLEDYYQYEDEDDDMDESYYGGSSSFRIGNRRWGDNGYVRAGRQEARPVHRVNFQDSGASSSCEPKKREAGKSTTGRRAKRAQKREAADKAAEAKHQQHLIRLGRK | 246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu9g0739 | 246 | Pfam | Ring finger domain | 47 | 90 | IPR001841 | - | |
| Ssu9g0739 | 246 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 113 | IPR013083 | - | |
| Ssu9g0739 | 246 | SMART | ring_2 | 47 | 89 | IPR001841 | - | |
| Ssu9g0739 | 246 | MobiDBLite | consensus disorder prediction | 194 | 246 | - | - | |
| Ssu9g0739 | 246 | ProSitePatterns | Zinc finger RING-type signature. | 65 | 74 | IPR017907 | - | |
| Ssu9g0739 | 246 | MobiDBLite | consensus disorder prediction | 202 | 239 | - | - | |
| Ssu9g0739 | 246 | Coils | Coil | 217 | 237 | - | - | |
| Ssu9g0739 | 246 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 4 | 246 | - | - | |
| Ssu9g0739 | 246 | SUPERFAMILY | RING/U-box | 46 | 96 | - | - | |
| Ssu9g0739 | 246 | ProSiteProfiles | Zinc finger RING-type profile. | 47 | 90 | IPR001841 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu9g0739 | 3 | 246 | C3H Transcription Factor Family | AT5G19430 | 57.087 | 9.50e-93 | 271 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu9g0739 | - | - | gmx:100785472 | 401.749 |