Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0717 ATGTTACAAGTCCGAGCATGCATACAAGTTATCAAGAGCTTCAATCACAGGCCAGGGCTCATGCTGGAGCAGCCTCTAGATTATGACACTTTGAGAGCTCTGGACTCTGATACTGCTTCTAGTACTCCATCAATGACAGAGGAAGAGATAAATGCCTTGCCTATTCAGTCATGGTTGACCTCAAAGGAGAAACTCAGCATTGGTATAGTGTCTCCCTATGCTGGCCAAGTTATTGCTATTCAAGAGAAACTTGGAAGGACATACAAAAGCCACGATGGATTTAATGTTAATGTGAAGTCCATTGATGGTTTTCAGGGCTGTGAGCAGGATGTTATTATCTTATCAGCTGTAAGAACCAACAACAGAACATCTCTTGAGTTCATTTCCTCTCCGCAGAGGACTAATGTTGCTCTTACAAGGGCTAGGCACTGCTTATGGATTTTGGGGAATGAAAGAGCCCTTACAAACAATGAAAATGTTTGGAAGGCTATTGTGCATGATGCTAGGAGCCGTAAATGTTTCTTTAATGTGGACCAAGATGACGAAATGGCAAAAGCTATTTTGGATGCAGAGGAAGAGTCAGATCAATTTGATGTTTCGTTTGATACAAATAGTGTCCATTTTAAAAATGGATTGTGGGAGGAACAAGAGTCCAAGGAGATTGCTTCTGAGACTGAAAAACTAGTCTAA 690 0.413 MLQVRACIQVIKSFNHRPGLMLEQPLDYDTLRALDSDTASSTPSMTEEEINALPIQSWLTSKEKLSIGIVSPYAGQVIAIQEKLGRTYKSHDGFNVNVKSIDGFQGCEQDVIILSAVRTNNRTSLEFISSPQRTNVALTRARHCLWILGNERALTNNENVWKAIVHDARSRKCFFNVDQDDEMAKAILDAEEESDQFDVSFDTNSVHFKNGLWEEQESKEIASETEKLV 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0717 229 Pfam AAA domain 55 151 IPR041679 -
Ssu9g0717 229 Gene3D - 28 189 IPR027417 -
Ssu9g0717 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 170 IPR027417 -
Ssu9g0717 229 CDD SF1_C_Upf1 45 169 IPR041679 -
Ssu9g0717 229 PANTHER DNA2/NAM7 HELICASE FAMILY 56 190 IPR045055 -
Ssu9g0717 229 PANTHER OS04G0582700 PROTEIN 56 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0717 Ssu-Chr9 31985882 31992587 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0717 26 58 C3H Transcription Factor Family AT3G55530 69.697 3.28e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0717 - - ccaj:109790531 274.633