Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0712 ATGGCAGAAATCGCAGTGTCCTTGGCACTAGACAAATTGCTTCCACTAATAAGAGATGAAGCAAATCTGCTACGGGGCATTCCCAAAGAATTTGCAGACATACAAAAAGAACTAGAATCCATTCAAGCCTGCCTTGAGAATGCAGATAGAAGGGCCGCAGAAGAAGGAGACAACACAAACAAGGGAATCAAAACATGGGTGAAAGGCTTGAGAGAAGCATCTTTTCGCATAGAAGATGTCATTGATGAATACATGATCTATGTTGAACAACAGCCACATGATCATGGATGTCCAACTTCACTCCGTAAGGTCATTCACTTTATTAAAACTTTGAAGCGTCGTCATCAAATAGCATCAGAGATTCAGCAGATTAAGTCATTTCTTCGTGGAATCAAGCAGCGAAGTAAAGATTATCACTTCCAACCCTCTGTTGAGCAAGGACCAAGCAGCTACGGAGGTAGGCAAAGCGTCCAATGGCATGACCCTCGATTGCGTTCCCGTTACCTTGAAGAAGCTGAAGTTGTTGGCATTGAAGGCCCAAGAGATGAATTGATTGGTTGGTTAGTGGAGGGACCGCCAGAGCGCAGTGTCATCTCTGTGGTAGGAATGGGAGGGCTAGGAAAAACCACTCTTGTCGGCAGAGTTTTCAACAACCAGAAGGTGATTGCACACTTTGACTACCATGCATGGATCACAGTGTCTCAATCCTACACTGTGGAAGGGTTGATGAGAGACTTGTTGATGAAgttatgcaaagaaaaaagggTGGATCCTCCTCAGGGTATTTCTATAATGGGTCAAGATTCATTGATTGATGAAGTGAGAAACCATTTGCAACAAAAGAGGTACGTTGTCATTTTTGATGATGTATGGAGTGTAGAACTttgggatcagattgaaaatgCCATGCTTGATAATAAAAATGGAAGTAGAATATTAATCACAACTAGGATGGATAGTGTTGTAGACTCTTGTAAGAACTCTCCTTCTGATAAGGTGCATGAGCTGAAACCTTTAACTCAAAAAGAATCTATGGAACTCTTTTGCAAGAAGGTATTCCAATGTCACAACAGTCCAGAAGAACTCAAGAAAATTTCTTCTGAGTTTGTTGAAAAGTGTAAGGGTTTACCATTAGCAATTGTGGCTATCGGTGGTCttttatctaaaaaagaaaagactccATCTGAATGGGAAAAAATTAGGCGAAGCCTAAGTTCAGAGATGGACAAAAATCCCCATTTAATTggtataacaaaaattttaggtTTCAGTTATGATGATTTGCCGTACTATCTTAAATCATGTTTCTTGTATTTTGGAATATATCCCGAAGACTATGAAGTTAAATCGACAAGACTAATTCGGCAGTGGATAGCTGAAGGATTTGTAaaagatgaagaaggaaaaactTTAGAGGACATTGCACAACAATATTTAACAGAGTTGATTGGTAGAAGTTTAGTGCAAGTCTCTTCATTCAGCATAGATGGCAAAGCTAAGAGTTGTCGTGTTCATGACTTATTACACGATATGATCCTTAGAAAATTCAAGGATTTGAGTTTCTGCCAGCATATCAGTAAAGAAGATGAGTCGATGTCAAGTGGAGTGATTCGGCGGTTGTCAATAGCAAGCAGTTCAGATGATTTAATGGGGAGTACAGAAAGCTTGCACACCCGGTCACTGCTTGTTTTTGCAGGTTATGAAGAATCAGCATTAACCAACAACTTTGTGCAAAGAATCCCTACAAAATATAGACTATTGAAGGTACTTGATGTTGAAGATAGTCTATTATATTCTGTTCCTGAAAATTGGGGAAATCTAGCACACTTGAAGTATTTAAGCttgaaaaattcaaacatgCCAACCCAGCTTCCAAAATTCATTGGCAAACTCCAGAACCTTGAGACCTTGGACTTAAGGAGAACAGGTGTCAAGGAAATGCAAAAGGAGATTTGCAAGCTTAGAAAGCTACGTCATCTTTTGGGTGATGATATGGCATTGTTTCAATTGAAGAATGGTGAAAGTTTGTATTTTCAAGATGGAGGGTTTCAGCAATTACGGGAACTAGCTCTTGGTCCCCTTTATAACTTGAAATCCATCATTATCGATAAAGGAGCACTCCATTCTTTGGAAAAGCTCCAATTTTGGCAAATACCCGAGCTCAAGACAGTACCTGCTGGCATCCAACACTTGGAAAAACTTGAAGTTCtcgatatatttttaatgtcaGATGAATTCAACGAGTGCATTGCTCCCGGTGGAGGACCAGAACACCCAATCATCCAGCATGTGCCCCTTGTAAAAATTACTACCaacataacaaaattgaaaattcgcGTTATTCATCACTCAAGGCATTAG 2361 0.3774 MAEIAVSLALDKLLPLIRDEANLLRGIPKEFADIQKELESIQACLENADRRAAEEGDNTNKGIKTWVKGLREASFRIEDVIDEYMIYVEQQPHDHGCPTSLRKVIHFIKTLKRRHQIASEIQQIKSFLRGIKQRSKDYHFQPSVEQGPSSYGGRQSVQWHDPRLRSRYLEEAEVVGIEGPRDELIGWLVEGPPERSVISVVGMGGLGKTTLVGRVFNNQKVIAHFDYHAWITVSQSYTVEGLMRDLLMKLCKEKRVDPPQGISIMGQDSLIDEVRNHLQQKRYVVIFDDVWSVELWDQIENAMLDNKNGSRILITTRMDSVVDSCKNSPSDKVHELKPLTQKESMELFCKKVFQCHNSPEELKKISSEFVEKCKGLPLAIVAIGGLLSKKEKTPSEWEKIRRSLSSEMDKNPHLIGITKILGFSYDDLPYYLKSCFLYFGIYPEDYEVKSTRLIRQWIAEGFVKDEEGKTLEDIAQQYLTELIGRSLVQVSSFSIDGKAKSCRVHDLLHDMILRKFKDLSFCQHISKEDESMSSGVIRRLSIASSSDDLMGSTESLHTRSLLVFAGYEESALTNNFVQRIPTKYRLLKVLDVEDSLLYSVPENWGNLAHLKYLSLKNSNMPTQLPKFIGKLQNLETLDLRRTGVKEMQKEICKLRKLRHLLGDDMALFQLKNGESLYFQDGGFQQLRELALGPLYNLKSIIIDKGALHSLEKLQFWQIPELKTVPAGIQHLEKLEVLDIFLMSDEFNECIAPGGGPEHPIIQHVPLVKITTNITKLKIRVIHHSRH 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0712 786 Gene3D - 4 118 - -
Ssu9g0712 786 Pfam Rx N-terminal domain 5 96 IPR041118 -
Ssu9g0712 786 PRINTS Disease resistance protein signature 629 645 - -
Ssu9g0712 786 PRINTS Disease resistance protein signature 277 291 - -
Ssu9g0712 786 PRINTS Disease resistance protein signature 373 387 - -
Ssu9g0712 786 PRINTS Disease resistance protein signature 197 212 - -
Ssu9g0712 786 Gene3D - 425 517 IPR036388 -
Ssu9g0712 786 SUPERFAMILY L domain-like 503 739 - -
Ssu9g0712 786 Pfam NB-ARC domain 180 426 IPR002182 GO:0043531
Ssu9g0712 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 439 IPR027417 -
Ssu9g0712 786 Coils Coil 31 51 - -
Ssu9g0712 786 PANTHER - 16 745 - -
Ssu9g0712 786 Gene3D - 338 424 IPR042197 -
Ssu9g0712 786 Gene3D - 168 331 IPR027417 -
Ssu9g0712 786 CDD RX-CC_like 2 132 IPR038005 -
Ssu9g0712 786 PANTHER DISEASE RESISTANCE PROTEIN RP 16 745 IPR044974 GO:0006952
Ssu9g0712 786 Gene3D Ribonuclease Inhibitor 572 750 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0712 Ssu-Chr9 31860348 31863137 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0712 173 394 WRKY Transcription Factor Family AT5G45050 26.126 1.96e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0712 K13457 - gmx:100789363 1033.48