Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0711 ATGGGCAATTGTTGCTCTCAAGGCAACGCTGCCGATGGCTCGGCTGATAATGCCGCTGCCGCCGCTGATGATAAGGGAGAAACCAACCAACAGAGTAACAACAAtgcaaacaacaacaataataataacacttcCACAAACCctaccaccaccaccccacCACCGACATCAAAGCCACCACCCTCAGCCTCACCACCTCCTTCAAAACCCTTGAAACCGGCCTCCATGGGCCCCGTCCTCGGCCGGCCGATGGAGGACGTGAGAGCCACGTACACCATTGGGAAAGAGCTAGGGAGGGGCCAATTTGGTGTAACACATTTGTGCACGGACAAAGCCACGGGTAAGCAATTTGCATGCAAAACCATTGCCAAGAGGAAGCTCGCCAACAAGGAGGACATAGAGGACGTGAGAAGAGAGGTGCAAATCATGCACCACCTCTCTGGTCAACCAAACATTGTGGAACTTAAAGGTGCTTATGAGGATAAACAATCGGTGCATTTGGTCATGGAGTTATGTGCCGGTGGTGAACTTTTCGATCGTATCATCGCTAAGGGACATTACACTGAACGTGCCGCGGCTTCCTTGTTGAGAACCATAGTGCAAATTGTTCACACTTTCCATTCCATGGGTGTCATTCATAGAGATCTTAAGCCTGAGAATTTCCTCTTGTTGAATAAGGATGAAAATGCACCCCTCAAGGCCACAGATTTTGGTCTATCCGTTTTTTACAAAGaagGAGAGACGTTCAAAGACATTGTTGGTAGTGCATATTACATTGCTCCAGAGGTCTTGAAGAGGAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATTCTTTTATGTGGTGTCCCTCCATTTTGGGCAGAATCCGAACATGGTATATTCAATGCCATCCTAAGAGGCCACATTGATTTTACAAGCGATCCATGGCCTTCAATTTCACCTGCAGCAAAGGATCTTGTAAGGAAAATGTTGAATTCAGACCCCAAACAAAGACTGACAGCATATGAAGTTCTAAATCATCCATGGATCATGGAGGACGGCGAAGCACCAGATAAACCACTTGATAATGCTGTACTGAATAGGCTCAAACAATTCAAAGCAATGAACGAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTGGATGTCTATCAGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAAGGGGATGGACACGGACAACAGTGGAACCATTACAGTTGAAGAGCTCAAGCAAGGGCTTGCAAAGCAGGGAACAAAGCTGACAGAACAAGAAGTTAAGCAATTAATGGAAGCTGCTGATGCTGATGGCAATGGAACCATAGATTACGACGAGTTCATCACAGCAACAATGCACATGAACCGAATGAACAGAGAAGAACATCTTTACACTGCCTTCCAATTCTTCGATAAAGATAACAGCGGGTTCATTACCACTGAAGAACTAGAACAAGCTCTCCGCGAGTATAACATGCATGATGGAAGGGACATCAAGGAAATCCTTCAAGAAGTTGATGGAGACAATGATGGGCGCATTAACTATGATGAGTTTGCGGCAATGATGAAAAAAGGAATTCCAGAAGTTATGACTAGGAAAAGGCGTGATTCATTGCCTTTGTCTTAG 1644 0.4392 MGNCCSQGNAADGSADNAAAAADDKGETNQQSNNNANNNNNNNTSTNPTTTTPPPTSKPPPSASPPPSKPLKPASMGPVLGRPMEDVRATYTIGKELGRGQFGVTHLCTDKATGKQFACKTIAKRKLANKEDIEDVRREVQIMHHLSGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLNKDENAPLKATDFGLSVFYKEGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESEHGIFNAILRGHIDFTSDPWPSISPAAKDLVRKMLNSDPKQRLTAYEVLNHPWIMEDGEAPDKPLDNAVLNRLKQFKAMNEFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITVEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMHMNRMNREEHLYTAFQFFDKDNSGFITTEELEQALREYNMHDGRDIKEILQEVDGDNDGRINYDEFAAMMKKGIPEVMTRKRRDSLPLS 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0711 547 MobiDBLite consensus disorder prediction 52 73 - -
Ssu9g0711 547 SUPERFAMILY Protein kinase-like (PK-like) 72 372 IPR011009 -
Ssu9g0711 547 Pfam EF-hand domain pair 397 457 IPR002048 GO:0005509
Ssu9g0711 547 Pfam EF-hand domain pair 466 529 IPR002048 GO:0005509
Ssu9g0711 547 SMART efh_1 503 531 IPR002048 GO:0005509
Ssu9g0711 547 SMART efh_1 468 496 IPR002048 GO:0005509
Ssu9g0711 547 SMART efh_1 396 424 IPR002048 GO:0005509
Ssu9g0711 547 SMART efh_1 432 460 IPR002048 GO:0005509
Ssu9g0711 547 SMART serkin_6 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0711 547 CDD STKc_CAMK 91 348 - -
Ssu9g0711 547 SUPERFAMILY EF-hand 389 529 IPR011992 -
Ssu9g0711 547 ProSitePatterns EF-hand calcium-binding domain. 512 524 IPR018247 -
Ssu9g0711 547 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Ssu9g0711 547 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Ssu9g0711 547 Gene3D Phosphorylase Kinase; domain 1 92 176 - -
Ssu9g0711 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Ssu9g0711 547 Gene3D - 357 531 - -
Ssu9g0711 547 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Ssu9g0711 547 MobiDBLite consensus disorder prediction 24 51 - -
Ssu9g0711 547 ProSitePatterns Protein kinases ATP-binding region signature. 97 124 IPR017441 GO:0005524
Ssu9g0711 547 MobiDBLite consensus disorder prediction 1 81 - -
Ssu9g0711 547 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Ssu9g0711 547 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Ssu9g0711 547 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Ssu9g0711 547 ProSiteProfiles EF-hand calcium-binding domain profile. 503 534 IPR002048 GO:0005509
Ssu9g0711 547 ProSiteProfiles Protein kinase domain profile. 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0711 547 Pfam Protein kinase domain 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0711 547 Gene3D Transferase(Phosphotransferase) domain 1 177 356 - -
Ssu9g0711 547 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 35 537 - -
Ssu9g0711 547 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0711 Ssu-Chr9 31831540 31835732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0711 1 542 EF-hand Containing Proteins AT5G12180 80.627 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu9g0711 Pkinase 1.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0711 K13412 - gmx:100781355 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0711 9 31831540 31835732 Ssu6g3304 6 74878485 74881943 PCT