Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0700 ATGATTGAGGCAATGGTCCAATTCACTCGTTGCCACCAAGTCAGCATCACGATGTTAAGCGTGTCAGGCACTGTTTCCAACATCACTCTTCATCACTCTCATTCTCatgcttttacttttattattcatGGAACCTTCAATTTAATTCCCCTTATTGGAACCTACATAAATAATGCCACTTTCGCTAGTTCTTCATCTTTATCATCATCATTTAATCTTGACCGTTGTCGTTCTTTTAGGATTTCCTTTTCTACGACTTTAAGTCAAAGCTTTATTAGGATTTTTGGAGGGAAGGTAATGGTAGCTAATGGGGTTATTGTGATAGCTACTATTTTCCAGAACTCTGAGGTTCAGAAGGTTGGGATGAATAACAATAGTAAAGAAAGGGatagtaataacaataaccCTAATGCATATGATCAAGGTGGCAATCAAAACATGTCTAAGCTTAATGTTGTTACCCCGTACCTTGAGATGTGA 480 0.3563 MIEAMVQFTRCHQVSITMLSVSGTVSNITLHHSHSHAFTFIIHGTFNLIPLIGTYINNATFASSSSLSSSFNLDRCRSFRISFSTTLSQSFIRIFGGKVMVANGVIVIATIFQNSEVQKVGMNNNSKERDSNNNNPNAYDQGGNQNMSKLNVVTPYLEM 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0700 159 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 2 142 IPR014476 GO:0003680
Ssu9g0700 159 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 119 - -
Ssu9g0700 159 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 2 142 - -
Ssu9g0700 159 Gene3D - 1 134 - -
Ssu9g0700 159 MobiDBLite consensus disorder prediction 123 147 - -
Ssu9g0700 159 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 112 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0700 Ssu-Chr9 31413444 31413923 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0700 1 127 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 27.132 2.98e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0700 - - gmx:100790942 137.887