Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0658 ATGTCAGGTGGAACAACATACTGGTGTTACACATGCAGGCAGCCAATCTGGCTTGAAGGGAGGGATGCCGTTTGCCCTCACTGCAATGGAGGCTTCGTGCAACAACTTAATGAGTTGCGAGGAGTTGCACACCAACATGGCTTTTCATCACGGTTGGAAAATATTCATCAAATGCCTGACATTCTTGATGCTGTACAAGTTGTTATGGAGCAAAGAGGTTCTGAACCAAGAATTGGGATTAGAGATGCTGTTGATAGTTTCATGAGGCAGAGAATGGCTGGAAGATACACAAACTTTGATGTTAGGAGGAGGTCTGGTTCTACCCCACTTCCTGATCAGACTTGGGGTGTCTTTAGTTCCGGtccttatttgatatttcacgGTCAAGCTCCAGGGTTCACCTTGTCTAACGGTAGCTCGAGAGGCGGTCCTAGGCATGTTGATTTTGGTGGCTACTTTTTGGGGCCTGGACTGGAAGGACTCATTGAACAACACATCACGAATGACCGGTTTGGTCCACCCCCTGCTTCGCGTTCTTCCATTGATGCAATGCCAACTATTAAGATCACACATGAACACCTCCACTCTGATTCACACTGTCCAGTTTGCAAAGAAAGGTTTGAACTGGGTTCTGAGGCCAGGAAGATGCCATGTAACCACATTTACCACTCAGACTGTATTGTTCCATGGTTAGTTCAGCATAACTCGTGTCCTGTTTGCCGTGTTGAGCTGCCACCTCAAGGACATGCTAGTTCCCGTGGTAGTCGAATTTGGGGAGGAAGGAATGCCAATGGTAATAGTGACAATGATATCTCTAGGGGCAGAGAGAATAGACAGCTGAACAATGGAAGGAGAAATCTACTATCATTTTTGTGGCCATTCCGTTCTTCTAGTTCAAATACTTAA 906 0.4536 MSGGTTYWCYTCRQPIWLEGRDAVCPHCNGGFVQQLNELRGVAHQHGFSSRLENIHQMPDILDAVQVVMEQRGSEPRIGIRDAVDSFMRQRMAGRYTNFDVRRRSGSTPLPDQTWGVFSSGPYLIFHGQAPGFTLSNGSSRGGPRHVDFGGYFLGPGLEGLIEQHITNDRFGPPPASRSSIDAMPTIKITHEHLHSDSHCPVCKERFELGSEARKMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGHASSRGSRIWGGRNANGNSDNDISRGRENRQLNNGRRNLLSFLWPFRSSSSNT 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0658 301 MobiDBLite consensus disorder prediction 251 279 - -
Ssu9g0658 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 1 300 - -
Ssu9g0658 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 300 - -
Ssu9g0658 301 Pfam zinc-ribbon 5 36 IPR039525 GO:0061630
Ssu9g0658 301 SUPERFAMILY RING/U-box 180 247 - -
Ssu9g0658 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
Ssu9g0658 301 CDD RING-H2_RNF126_like 200 241 - -
Ssu9g0658 301 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Ssu9g0658 301 Pfam Ring finger domain 199 241 IPR001841 -
Ssu9g0658 301 SMART ring_2 200 240 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0658 Ssu-Chr9 29972422 29973327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0658 143 256 C3H Transcription Factor Family AT5G01980 41.379 3.26e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0658 K11982 - ccaj:109790507 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0658 9 29972422 29973327 Ssu6g3272 6 74420216 74421178 PCT