Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0657 ATGACTGTTACCTTCTCAAATCTGCACACAGACTCAGGCCTCAAGTCCCTTGACGACTTCCTCTCTGGGAAGACCTACATTTCTGGGGATCAGTTCACAAAGGATGACATCAAAGTGTATGCTGCTGTTTTGGATAAGCCAGGTGACTCTTTCACCAGTGCTGGCAAGTGGTACGAGGTTGTCTCCTCTCACCTTGCTGCGAGCTTCCCTGGCAATGCTCAAGGGGTGAGATTCAGTGGCAAAGCTCCTGCTCCAGCTGAGGCGGCTCCTGCAAAACCGGATGCTTCTGCTGctgaagatgatgatgacctTGATCTCTTTGGTGATGAGACAGAGGAGGACAAAAAGGCAGCAGAGGAAAGGGAGGCTGCTAAGAAGTCTGccaagaagaaagagaGTGGCAAATCTTCTGTTCTTCTCGATGTTAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTGTTGAAATGCCTGGTCTATTGTGGGGAGCATCCAAACTGGCTCCTGTTGGTTATGGGATCAAGAAGTTGCAGATCATGTTAACCATTGTCGATGACCTTGTATCTGTGGACTCCCTTATTGAGGAGCATCTGACAGTTGAGCCCCGCAACGAGTGCATGGGATTAACATTAATGAGTGAGGGGTTTCTGTTTAGCTGTAGATGCAaccatttttcatttgtttacatTGGAGGTGGTAGCACCTGGGCAGAGgataaaaggaaaataaccgAAACAAGCTTCAACCAGCTTTTGAATGCCTTGAACAGAAGTTTGGTGTTCTAA 804 0.444 MTVTFSNLHTDSGLKSLDDFLSGKTYISGDQFTKDDIKVYAAVLDKPGDSFTSAGKWYEVVSSHLAASFPGNAQGVRFSGKAPAPAEAAPAKPDASAAEDDDDLDLFGDETEEDKKAAEEREAAKKSAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEMPGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTVEPRNECMGLTLMSEGFLFSCRCNHFSFVYIGGGSTWAEDKRKITETSFNQLLNALNRSLVF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0657 267 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 100 108 IPR001326 GO:0003746|GO:0005853|GO:0006414
Ssu9g0657 267 CDD EF1B 138 202 IPR014038 GO:0003746|GO:0006414
Ssu9g0657 267 Pfam EF-1 guanine nucleotide exchange domain 137 206 IPR014038 GO:0003746|GO:0006414
Ssu9g0657 267 Gene3D - 128 213 IPR014717 -
Ssu9g0657 267 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 212 - -
Ssu9g0657 267 SUPERFAMILY GST C-terminal domain-like 10 64 IPR036282 -
Ssu9g0657 267 SMART EF1_GNE_2 135 218 IPR014038 GO:0003746|GO:0006414
Ssu9g0657 267 MobiDBLite consensus disorder prediction 78 107 - -
Ssu9g0657 267 SUPERFAMILY eEF-1beta-like 132 208 IPR036219 -
Ssu9g0657 267 PANTHER TRANSLATION ELONGATION FACTOR EF1B/RIBOSOMAL PROTEIN S6-RELATED 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0657 Ssu-Chr9 29934988 29938800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0657 1 213 Eukaryotic Initiation Factors Gene Family AT5G12110 70.046 1.05e-95 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0657 K03232 - gmx:100306132 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0657 9 29934988 29938800 Ssu6g3271 6 74409454 74412396 PCT