Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0654 ATGTATGTAGTAAAAGGCATATTGAGAGCCATGAGTAACATGACAAGTGGGGGTGATACTCGGAAAATATCCAAAGGTCGCCGATCATCATCATTAGGTGAAGAGGCCGGGGATGGAGGAAACATGGCAGGAGAAGGTCCTCTAAAGAAAGGCCCATGGACTGCAGCAGAGGATGCAATTTTGGTAGAATATGTCAAAAAGCACGGACAAGGCAATTGGAACGCTGTCCAAAAGTATTCAGGACTTGCCCGTTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCATTTAAGACCAGATCTGAAAAAGGGAGCATTTACTACAGAAGAAGAGAACCGAATCCTTGAGCTCCATGCTAAGATGGGAAACAAATGGGCTCGAATGGCAGCAGAGTTGCCTGGACGTACAGATAACGAGATCAAGAACTACTGGAATACAAGAATCAAAAGAATGCAACGAGCTGGCTTACCAATCTACCCTGAAGAATTGTGCCAACGGATACTTAATGGCAATCAAGAAAGTCAAAATGTTGGCACCTTGACAAATGAAGCCTCCCCGCATGATGATCTCTCACAAACAGACAATTTTGATATACCAGATgtggaattaaaaaatttcaaattacgTCATGGTCTATCACATGGACTGTCAATTTTTGATATGCCTGAATGCAGCATTGAACAAAGTGTAGACTCATCCCACagttataactttttgtttCCAACAATGCATCCCTCGAAACGCCTTCGGGAGTCAGAAATGCTATACAATAGTTTTGGCAGTTGGACAAGTAATGCTGTCCCGCTATTTGATCAGTATGGCAATTATACTTGTGAGAAAATTTCTGACCATCCTAGGTTGCCTCCTCCATGCGACCCCATTCCTAACACCAGTGATCAATTTCATGGTGATAACCCTACCGGCAGCCATGCCGCAGGAAATGGCAATGCCTCTTCTTCTGTTCCCATATCTGGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACTCAACATGGTAGCTGGGGCACTCCCACGTCCCCACTTCCTTCACTTGAGTCCGTTGACACATTGATTCAGTCTCCTCCAGTTGAGCCTATTCTGTCAGATCCCATTTCTCCACAGAGCAGTGGTTTGCTGGAAGCGGTAGTCTCCAACTCGAAGAGCTTGAAAGGCTCAAACAATGATTTATTATTGCAAGAGACAACTGGTGCGGCCAACGAAGCAGCCAAGAGTTTAACCTTGAATCATCCCTTTAAGACAGAATGGGAGGAACAAAGGGAACCAAATTCCCCCTTAGGTCAATCTGCTGCTTCAGTTCTGACTGACTATACTCCTAGAAGCATGTGCTCAGTGGATGGGCCCCAATCAATTGAAACCACTCAGGATCATGATGATAAGCATGAAGCACTCACCCAGTTACCAGATAATTCcaggaagaaagaaaatttgaatcaGATAGATTTTATGCGGCCTGATGCTTTACTTGACATAGGTTGGTTTGGGAATAGCACTGAGTATGGCAGTGATCAATCTGTTCTAAAAGATGCTTTGAGTGCACTTCTTGGTGAAGATTGCCAGGGTCAGCAGTAG 1599 0.4353 MYVVKGILRAMSNMTSGGDTRKISKGRRSSSLGEEAGDGGNMAGEGPLKKGPWTAAEDAILVEYVKKHGQGNWNAVQKYSGLARCGKSCRLRWANHLRPDLKKGAFTTEEENRILELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPEELCQRILNGNQESQNVGTLTNEASPHDDLSQTDNFDIPDVELKNFKLRHGLSHGLSIFDMPECSIEQSVDSSHSYNFLFPTMHPSKRLRESEMLYNSFGSWTSNAVPLFDQYGNYTCEKISDHPRLPPPCDPIPNTSDQFHGDNPTGSHAAGNGNASSSVPISGAMKLELPSLQYPETQHGSWGTPTSPLPSLESVDTLIQSPPVEPILSDPISPQSSGLLEAVVSNSKSLKGSNNDLLLQETTGAANEAAKSLTLNHPFKTEWEEQREPNSPLGQSAASVLTDYTPRSMCSVDGPQSIETTQDHDDKHEALTQLPDNSRKKENLNQIDFMRPDALLDIGWFGNSTEYGSDQSVLKDALSALLGEDCQGQQ 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0654 532 CDD SANT 52 97 IPR001005 -
Ssu9g0654 532 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 152 IPR017930 -
Ssu9g0654 532 Gene3D - 49 102 - -
Ssu9g0654 532 MobiDBLite consensus disorder prediction 298 322 - -
Ssu9g0654 532 ProSiteProfiles Myb-like domain profile. 98 148 IPR001005 -
Ssu9g0654 532 CDD SANT 105 146 IPR001005 -
Ssu9g0654 532 Gene3D - 105 151 - -
Ssu9g0654 532 ProSiteProfiles Myb-like domain profile. 45 97 IPR001005 -
Ssu9g0654 532 SUPERFAMILY Homeodomain-like 48 144 IPR009057 -
Ssu9g0654 532 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 97 IPR017930 -
Ssu9g0654 532 Pfam Myb-like DNA-binding domain 50 97 IPR001005 -
Ssu9g0654 532 Pfam Myb-like DNA-binding domain 103 146 IPR001005 -
Ssu9g0654 532 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 11 528 - -
Ssu9g0654 532 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 11 528 - -
Ssu9g0654 532 MobiDBLite consensus disorder prediction 15 49 - -
Ssu9g0654 532 MobiDBLite consensus disorder prediction 287 322 - -
Ssu9g0654 532 SMART sant 102 150 IPR001005 -
Ssu9g0654 532 SMART sant 49 99 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0654 Ssu-Chr9 29809128 29815231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0654 48 527 MYB Transcription Factor Family AT5G06100 39.184 2.15e-91 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu9g0654 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0654 K09422 - gmx:100800658 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0654 9 29809128 29815231 Ssu6g3269 6 74385757 74388066 PCT