Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0642 ATGGTCTTTGAATACATGGACCATGATTTGACAGGTCTTGCTGATCGACCTGGGATAAGATTCACAGTTCCCCAAATTAAGTGCTACATGAGACAGCTTCTGACTGGGCTGCATTACTGTCACATAAATCGAGTACTTCACCGTGATATCAAAGGTTCAAATCTTCTCATAGATAATGAAGGTAATCTTAAACTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGAGCACAATGCAAATCTTACAAATCGTGTCATCACATTATGGTACAGTTTTGATTGTCATGCTCTGGAATTGTTGGAGAAGATGCTCACACTTGATCCTGCTCAGATCGGAACGGAACGACGATTCGACGATCTTACGATTAAAATCGCGATCCACGAACGATCCGCAGAAGCTGCAATCCGCTGTACGAGCTTCCTCGTCGCCCCCCTCCAAACTCGCAACATCGTACGAtctaTTCATGAAACACTCATTACTCATGCAAGTGTATGTATTCACTAg 507 0.4241 MVFEYMDHDLTGLADRPGIRFTVPQIKCYMRQLLTGLHYCHINRVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYSFDCHALELLEKMLTLDPAQIGTERRFDDLTIKIAIHERSAEAAIRCTSFLVAPLQTRNIVRSIHETLITHASVCIH 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0642 168 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
Ssu9g0642 168 Pfam Protein kinase domain 1 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0642 168 PANTHER CELL DIVISION PROTEIN KINASE 1 91 - -
Ssu9g0642 168 PANTHER CYCLIN-DEPENDENT KINASE C-2 1 91 - -
Ssu9g0642 168 Gene3D Transferase(Phosphotransferase) domain 1 6 91 - -
Ssu9g0642 168 ProSiteProfiles Protein kinase domain profile. 1 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0642 168 SUPERFAMILY Protein kinase-like (PK-like) 1 91 IPR011009 -
Ssu9g0642 168 SMART serkin_6 1 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0642 Ssu-Chr9 29098720 29104806 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0642 1 91 Core Cell Cycle Gene Families AT5G10270 90.110 1.87e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Ssu9g0642 Pkinase 7.5e-25 CL0016