Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0640 ATGCCTGAGTTGTTTTTTCCTTCCAAAGTGTTACATGAGACAGCTTCTGACTGGGCTGCATTACTGTCACGTTCAAATCTTCTCATAGATAATGAAGGTAATCATAAACTTGTAGATTTTGGGCTGGCACGATCATTTTCTAATGAGCACAATGCAAATCTTACAAATCGTGTCATCACATTATGGTACAGTTTTGATCGTCATGCTCTGGAATTGTTGGAGAAGATGCTCACATTTGATTCTGCTCagAAATGA 255 0.3804 MPELFFPSKVLHETASDWAALLSRSNLLIDNEGNHKLVDFGLARSFSNEHNANLTNRVITLWYSFDRHALELLEKMLTFDSAQK 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0640 84 ProSiteProfiles Protein kinase domain profile. 1 84 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0640 84 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 24 63 - -
Ssu9g0640 84 Gene3D Transferase(Phosphotransferase) domain 1 21 65 - -
Ssu9g0640 84 PANTHER CELL DIVISION PROTEIN KINASE 24 63 - -
Ssu9g0640 84 SUPERFAMILY Protein kinase-like (PK-like) 25 63 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0640 Ssu-Chr9 28987848 28989443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0640 54 84 Core Cell Cycle Gene Families AT5G64960 58.065 4.09e-06 41.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Ssu9g0640 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0640 K08819 - rcu:8259292 78.5666