Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0639 ATGGGGAACACTTGTGGCAAGCCAGTTGCTCATGTATCTTCCTCCAGTTTTGCTGGAAGTAAGAAGCCTGTAAGTAAGCCAAAGCAATATTCAAATCCTTCTGAACAAAAACCTGCTCCAAAAACTTCAGAATCAAATGTTGGCAGATCCATCTCCAGTAACCTTAAGTCCTTCAGCTTGAATGATCTAAAGGAAGCCACTAAGAACTTCCGGCGAGAAAATTTAATTGGAGAGGGAGGATTTGGGCGCGTCTTCAAAGGATGGATTGACGAAAACACATATGCTCCCACAAAACCAGGCAGTGGAATTGTAGTGGCTATTAAAAATCTTAAGCCAGAAAGCTTCCAAGGCCACAAGGAATGGCTTGCAGAAGTCAATTATCTTGGGGAACTTCAGCATGAAAATTTGGTGAAACTTATTGGTTATTGCTTGGAAGGTAAAAACAGGCTTCTGGTTTATGAGTTCATGCAAAAAGGAAGTTTGGAGAATCATATATTCAGAAAAGGTGTTCAACCTATGGCCTGGGTTACAAGGGTCAACATTGCAATTGGTGTTGCACGAGGATTAACATTCTTACATTCCCTGGATGCAAATGTTATCTTTCGCGATTTAAAGGCTTCCAATATCCTACTTGATTCAGACTTCAATGCAAAGCTTTCCGATTTTGGCTTGGCAAGAGATGGTCCTACTGGGGATAATACTCACGTTTCAACTAGAGTTATAGGAACTCAAGGCTACGCTGCACCGGAGTATGTTGCTACAGGTCATTTGACCCCAAGGAGTGATGTATACAGCTTTGGTGTAGTCTTGTTAGAGTTACTAACAGGAAGGCGTGCGGTGGAAGATGATAGGCCTGGATTTTCAGAGGAAACCCTGGTGGATTGGGCAAAGCCATTCCTGAGTGATAGCAGAAGAGTTTTGAGAATAATGGATACAAGGTTGGGGGGTCAATACTCCAAGAAAGGAGCACAAGCTGCAGCTGCACTTGCATTGCAATGCCTGAACACTGACCCCAAATTTAGACCACCTATGGTGGAAGTTCTAGCAGCATTGGAAGGACTTCATTCCTCAAATTCAATCCCAAGGACACCAAGATCTGAGGGTCAGGCAACCAAACATTCTGGTGGCCATTCACAAAAGTAA 1143 0.4322 MGNTCGKPVAHVSSSSFAGSKKPVSKPKQYSNPSEQKPAPKTSESNVGRSISSNLKSFSLNDLKEATKNFRRENLIGEGGFGRVFKGWIDENTYAPTKPGSGIVVAIKNLKPESFQGHKEWLAEVNYLGELQHENLVKLIGYCLEGKNRLLVYEFMQKGSLENHIFRKGVQPMAWVTRVNIAIGVARGLTFLHSLDANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRAVEDDRPGFSEETLVDWAKPFLSDSRRVLRIMDTRLGGQYSKKGAQAAAALALQCLNTDPKFRPPMVEVLAALEGLHSSNSIPRTPRSEGQATKHSGGHSQK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0639 380 Gene3D Transferase(Phosphotransferase) domain 1 156 372 - -
Ssu9g0639 380 SMART serkin_6 70 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0639 380 PANTHER TYROSINE KINASE FAMILY PROTEIN 17 378 - -
Ssu9g0639 380 MobiDBLite consensus disorder prediction 8 49 - -
Ssu9g0639 380 MobiDBLite consensus disorder prediction 356 380 - -
Ssu9g0639 380 Pfam Protein tyrosine and serine/threonine kinase 73 349 IPR001245 GO:0004672|GO:0006468
Ssu9g0639 380 CDD STKc_IRAK 76 354 - -
Ssu9g0639 380 Gene3D Phosphorylase Kinase; domain 1 44 155 - -
Ssu9g0639 380 ProSiteProfiles Protein kinase domain profile. 70 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0639 380 SUPERFAMILY Protein kinase-like (PK-like) 45 357 IPR011009 -
Ssu9g0639 380 PANTHER OS01G0588500 PROTEIN-RELATED 17 378 - -
Ssu9g0639 380 MobiDBLite consensus disorder prediction 1 49 - -
Ssu9g0639 380 ProSitePatterns Protein kinases ATP-binding region signature. 76 108 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0639 Ssu-Chr9 28940089 28943541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0639 7 351 Glycoside Hydrolase AT3G07070 45.869 2.98e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu9g0639 PK_Tyr_Ser-Thr 2.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0639 - - gmx:100800654 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0639 9 28940089 28943541 Ssu6g3263 6 74318709 74322574 PCT