Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0621 ATGTTGGGTCGAGGAGGAGGAAGGGACCGGTTTAGGAGGGATTACCCTTCAAGGTATGAAGATAATAAAGGGAATGGGGTTAGTGGACGTGATAACCGCAACAGCAACAGCAACAGCAACAACCCTCCTTCCAGGCATCTCTGGGTTGGGAATCTATCCCACGATATTGTAGAGGAAGAACTTGCTCACCATTTCTTGCAGTTTGGACCGCTGGAGAATGTGGCGTTCCAGCCCAGTCGCAGTTATGCTTTCATAAATTTCAGAAGGGATGAAGATGCTATTGATGCCATGAGAGCACTGCAAGGTTTTCTTCTTGCAGGCAACCCGCTTAGAATCGAGTTTGCAAAGGCGGATAAGCCGTTAGCAATACCACGTGATGAAGATTACTCTTGGGATGAACGAAACTCAACATTAAGGGGATCTCCTTTCTCGCAAAGAGAGTATAGAGGCCACCGTGGTAGCCCTGAACCACATTATTCTGACAAATCCAAGCCAAGTGATAAAAATCCAGAACCCAGTGAGGTTCTGTGGATTGGGTTCCCAGCTCAGTTGAAGGTGGATGAATCAATTTTAAGAAAGGCTTTTTCTCCATTTGGTGAGATAGTAAAGATTACTACATTTCCAGGTCGTAGTTATGCCTTTGTTCGCTTTAGGAGCCTGACATCTGCATGCAGAGCAAGAGATAATCTGAAGGGAAAGTTATTTGGGAATCCCCGTGTACATATTTGTTTTGCCAAGAGTGAAACAGGTTCATCAAGCAGTGAGAGGAGATCATTTAATGGCCCTCGTTCCCCAATTTACAAGTCAAGTGGTCGCGATGGATCTTCTGAGAACCTCAGACAGGACAGGAGCTTCAATGGAGATCGCAACATTGGTTCTCCAAACCTTTTCCGGAATTGGGATTCTGATGCTTATGATCTTAACAAAAGGGGTTCTTCATGGACTGGTGGGAGCAACACATATGAGCAAAGGAAAGTTGGAGAGAAGGGGAGAACACTAGGAGTATCACAAGAAATCTATGAACATATGAATAGTCCATCAAGAGAAAGACATGCTCATGTGGGTGATTTTCCACAGAGATTTCCTCAAAAGGGTGCATACTTTGAAGATATGCAGGCCTTGCCAGATGTTCCCTATCTACGTGAGGCTAAACGGCTGAAGACTGGTTCTCCTTCTCTTGAAAGAGAGCTTCCAGAGTATCCTTTTGCCGAGTTAGAAAGACAGAAACGTGTTTTCCCAAGATTATTAACTGATTTACCCCAACACGAGCCTTTTGATAAAGGCTTTGATGCTGGAAATTTTACTTATGGCCAGACTCTTGATCATCCCCCAAATTCTCCTCTGCCTCGTTTAGATAGACATGAAGGCTACAAACCTTATGATAGTTTCCAAATGGGTCCTGGTGCTCTGCAGTCAACTTTTGTTGAGAAGAAAAGATTCACGCCTGAACCTGATAGTTCACCTATCACTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGTGGAACCCCTGTTTGTCGTGCACGCTGCTTCCCCGTGGGGAAAGTCCTAGATATGATGttaCCTGAATTCTTGGATTGCACTGCAAGAACTGGTCTAGATATGCTTTCAAAGCATTACTACCAAGCAGTTGGTGTTTGGGTTGTTTTCTTTGTGCCTGGAAGTGATGCTGACATCGAATTCTAcaatgaatttatgcattatctGGAGGAAAAGCAGCGCGCTGCAGTGGCCAAGTTGGATGACAAGACCACCTTATTTCTTGTTCCTCCATCAGAGTTCTCAGAGAAAGTACTGAAGGTACCGGGTAAGTTGAGCATATCTGGTGTTATTCTGAGGTTGGAGAATCCTGGTTTAAATCATGGTCCTGGGCACATTCAAAGTGAAATGGCAAACGAGAACCTGTTGTCCTATAACGAGAACATACTGCATCCAAAGTCATCATTTCCGTCAGTACGTATACCTACATCCCCATCTATTTCAGAATTGGGTAATTCTGGAATCAGCAATCTTTCATTTCTGGGAAATAAATTTGCAGCAGCTCCATCAATTTCTGATTCAGCTCGTGCCGCAGTTAGCATGTCTGAGTCTCATGATGAAAGAAGTCGCAACTATCCTATACAGCAGCGGACTTCTGGACCAAACTGGTCTTCTCAAAATCTGCAGAACTTCTGTAATAGAACTCTACAATTGCAACCATCAGGTGGTACTGTAGAACCTATTGCTGAAGAACGCCAACCCATCATTCCAAGGGCCGTGTCAGATGTAAACTCAATTCAACATTCCAGTGGAATTTCTGGTATTCCATTTTATGGTGACAGCAAGTTGTCTTACCCAGATATAAGACATTTAGATCCTTTATCAGTGCCTGTGGGAGCCCTTCCACCAGAACAGCTTGCACAACTAGCTGCATCTATTCTTGAGCAGCAAAGGCAATCAGGAAGCTCTTCGAGTGCATCTGCATTGGGTGATCCCCGGCAGATTAACAGATTTAGCACCTCCGACACCTCATCCAGACCACCCCAGAAATATGCTACAGAAAACAGTCTGGTGAATTCTGACCTCTCAACATCTCAGTTTGGTCAAATTCTACAGATGCAAAAGCAACAACAGACCTCAAATGTGCCTCAGTTGTCACAGATGGTTCAAAGGGAACAACAAAGAGAGGCTAATGGAAATCAGCCGTTGACGGATAGTAGCTTGCAGGAAGATACTGATGCAGATCCACAGAAACGTCTACAAGCAACACTTCAGCTGGCTGCTGTTCTTCTTCAGCAAATCCAGCAAGGAAAAGGAAGTTGA 2802 0.4415 MLGRGGGRDRFRRDYPSRYEDNKGNGVSGRDNRNSNSNSNNPPSRHLWVGNLSHDIVEEELAHHFLQFGPLENVAFQPSRSYAFINFRRDEDAIDAMRALQGFLLAGNPLRIEFAKADKPLAIPRDEDYSWDERNSTLRGSPFSQREYRGHRGSPEPHYSDKSKPSDKNPEPSEVLWIGFPAQLKVDESILRKAFSPFGEIVKITTFPGRSYAFVRFRSLTSACRARDNLKGKLFGNPRVHICFAKSETGSSSSERRSFNGPRSPIYKSSGRDGSSENLRQDRSFNGDRNIGSPNLFRNWDSDAYDLNKRGSSWTGGSNTYEQRKVGEKGRTLGVSQEIYEHMNSPSRERHAHVGDFPQRFPQKGAYFEDMQALPDVPYLREAKRLKTGSPSLERELPEYPFAELERQKRVFPRLLTDLPQHEPFDKGFDAGNFTYGQTLDHPPNSPLPRLDRHEGYKPYDSFQMGPGALQSTFVEKKRFTPEPDSSPITEWKWEGTIAKGGTPVCRARCFPVGKVLDMMLPEFLDCTARTGLDMLSKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEKQRAAVAKLDDKTTLFLVPPSEFSEKVLKVPGKLSISGVILRLENPGLNHGPGHIQSEMANENLLSYNENILHPKSSFPSVRIPTSPSISELGNSGISNLSFLGNKFAAAPSISDSARAAVSMSESHDERSRNYPIQQRTSGPNWSSQNLQNFCNRTLQLQPSGGTVEPIAEERQPIIPRAVSDVNSIQHSSGISGIPFYGDSKLSYPDIRHLDPLSVPVGALPPEQLAQLAASILEQQRQSGSSSSASALGDPRQINRFSTSDTSSRPPQKYATENSLVNSDLSTSQFGQILQMQKQQQTSNVPQLSQMVQREQQREANGNQPLTDSSLQEDTDADPQKRLQATLQLAAVLLQQIQQGKGS 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0621 933 MobiDBLite consensus disorder prediction 691 719 - -
Ssu9g0621 933 PANTHER RNA-BINDING PROTEIN SPENITO 25 922 - -
Ssu9g0621 933 MobiDBLite consensus disorder prediction 133 172 - -
Ssu9g0621 933 MobiDBLite consensus disorder prediction 145 169 - -
Ssu9g0621 933 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 110 IPR000504 GO:0003723
Ssu9g0621 933 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 239 IPR000504 GO:0003723
Ssu9g0621 933 MobiDBLite consensus disorder prediction 251 290 - -
Ssu9g0621 933 Gene3D - 160 257 IPR012677 -
Ssu9g0621 933 SUPERFAMILY RNA-binding domain, RBD 185 275 IPR035979 GO:0003676
Ssu9g0621 933 PANTHER RNA RECOGNITION MOTIF-CONTAINING 25 922 - -
Ssu9g0621 933 MobiDBLite consensus disorder prediction 864 903 - -
Ssu9g0621 933 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 247 IPR000504 GO:0003723
Ssu9g0621 933 MobiDBLite consensus disorder prediction 1 46 - -
Ssu9g0621 933 MobiDBLite consensus disorder prediction 864 913 - -
Ssu9g0621 933 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 117 IPR000504 GO:0003723
Ssu9g0621 933 MobiDBLite consensus disorder prediction 28 46 - -
Ssu9g0621 933 MobiDBLite consensus disorder prediction 1 27 - -
Ssu9g0621 933 Pfam SPOC domain 489 602 IPR012921 -
Ssu9g0621 933 SMART rrm1_1 175 243 IPR000504 GO:0003723
Ssu9g0621 933 SMART rrm1_1 46 113 IPR000504 GO:0003723
Ssu9g0621 933 MobiDBLite consensus disorder prediction 251 274 - -
Ssu9g0621 933 Gene3D - 26 121 IPR012677 -
Ssu9g0621 933 MobiDBLite consensus disorder prediction 810 851 - -
Ssu9g0621 933 CDD RRM3_Spen 47 116 - -
Ssu9g0621 933 SUPERFAMILY RNA-binding domain, RBD 31 123 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0621 Ssu-Chr9 28601073 28623744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0621 36 271 Eukaryotic Initiation Factors Gene Family AT4G34110 22.308 9.92e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0621 - - gmx:100811668 1541.17