Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu9g0614 | ATGGCGCATAGGTTGCTGAGAGACCACGAAGCCGACGGTTGGGAGCGCTCCGATTTCCCCATCATCTGCGAATCCTGCCTCGGCGACAGCCCCTACGTTCGAATGACAAGAGCAGAGTATGACAAAGAGTGCAAGATTTGTACACGGCCATTCACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAATCTGAGATCTGCCAGACATgtagtaaattgaaaaatgtcTGTCAAGTATGCCTTCTGGATCTTGAATATGGACTACCAGTTCAAGTTCGGGACACGGCTCTCAGTATTGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCATGACCGTAGGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAAGTACGCCCAAATGATACTATACTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGGGCGCATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGTGCTGAGTGCCCTTATAGACATGAGATGCCAGTAACTGGGGAATTGTCTCAGCAAAATATTAAAGATCGTTATTATGGGATGAATGATCCAGTGGCTTTGAAGTTACTTGGCAAGGCAGGAGAGATGGCCACTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAACAGGATTTGCGGGATCACTTCTATGCCCATGGAGAAATCGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACATATACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCTAACAAACTAGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACATCAAAACCTGAGTCAGATGGCTCTGATCAAGCAAGGCAGCAGGCGTCTGTGGCTCATAGTGGGTTGTTGCCTCGGGCAGTTATATCACAGCAGCAGAACCAGGACCAAACCCAAGGAATGCATTACTATAACAATCCACCACCTCTTCAGCAAGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTGTTCCATCCCAAGACGGTCCTCCTGGTGGCCCTTCTGGGTCAGGGGAGAACAAGCCCAGTCTGGAGAAGCAGCAAATGCAACATTATGCCCATCCAATGATGCCGCCTCTACCTGGCCAATACCATCATCAATATTATCCTCCATATGGTTATATGCCACCAGCTCCCCCTTATCATCAGTACCCACCTCCATACAATGCTGCAGTGGCTCCATCCCAGCCACCAGCTCCAAATCATCCTTATCAGCACTCTATGCAGCCAGGGTCTTCACAGACAGGGTCTGGACAGGCTGCATCTGCCCCAGTTGAAACTGGAACATCAACATCAGGGTCACAGCAGCAATAA | 1455 | 0.468 | MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGMNDPVALKLLGKAGEMATLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMHYYNNPPPLQQERSYYPSMDPQRMGALVPSQDGPPGGPSGSGENKPSLEKQQMQHYAHPMMPPLPGQYHHQYYPPYGYMPPAPPYHQYPPPYNAAVAPSQPPAPNHPYQHSMQPGSSQTGSGQAASAPVETGTSTSGSQQQ | 484 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu9g0614 | 484 | MobiDBLite | consensus disorder prediction | 299 | 321 | - | - | |
Ssu9g0614 | 484 | MobiDBLite | consensus disorder prediction | 452 | 484 | - | - | |
Ssu9g0614 | 484 | MobiDBLite | consensus disorder prediction | 430 | 451 | - | - | |
Ssu9g0614 | 484 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 230 | 288 | IPR000504 | GO:0003723 | |
Ssu9g0614 | 484 | Gene3D | - | 149 | 208 | - | - | |
Ssu9g0614 | 484 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE | 1 | 460 | - | - | |
Ssu9g0614 | 484 | PANTHER | PRE-MRNA-SPLICING FACTOR RBM22 | 1 | 460 | IPR039171 | GO:0003723 | |
Ssu9g0614 | 484 | SUPERFAMILY | RNA-binding domain, RBD | 222 | 310 | IPR035979 | GO:0003676 | |
Ssu9g0614 | 484 | SUPERFAMILY | CCCH zinc finger | 159 | 182 | IPR036855 | GO:0046872 | |
Ssu9g0614 | 484 | ProSiteProfiles | Zinc finger C3H1-type profile. | 157 | 184 | IPR000571 | GO:0046872 | |
Ssu9g0614 | 484 | SMART | rrm1_1 | 229 | 297 | IPR000504 | GO:0003723 | |
Ssu9g0614 | 484 | MobiDBLite | consensus disorder prediction | 334 | 360 | - | - | |
Ssu9g0614 | 484 | MobiDBLite | consensus disorder prediction | 334 | 396 | - | - | |
Ssu9g0614 | 484 | MobiDBLite | consensus disorder prediction | 430 | 484 | - | - | |
Ssu9g0614 | 484 | CDD | RRM_RBM22 | 227 | 300 | - | - | |
Ssu9g0614 | 484 | Pfam | Torus domain | 147 | 194 | IPR032297 | - | |
Ssu9g0614 | 484 | MobiDBLite | consensus disorder prediction | 304 | 320 | - | - | |
Ssu9g0614 | 484 | Gene3D | - | 212 | 310 | IPR012677 | - | |
Ssu9g0614 | 484 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 228 | 301 | IPR000504 | GO:0003723 | |
Ssu9g0614 | 484 | SMART | c3hfinal6 | 157 | 183 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu9g0614 | Ssu-Chr9 | 28465118 | 28470515 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu9g0614 | 215 | 289 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 33.750 | 5.18e-07 | 50.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu9g0614 | K12872 | - | gmx:100778975 | 900.197 |