Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0612 ATGGTGGCGCCACCAAAGCCTCGTGAGGTGCGGATTCGCATTGTATGTTCCTCTCTCTGCCACAGCGACATCACTTATCGGAACATCcagGACCCTCCTGCCATTTTCCCAAGAATTCTAGGTCATGAGGCAACTGGGGTTGTGGAAAGTGTAGGGAAGGATATAACTGAAGTTACAAAAGGTGATGTGGTTATTCCAGTTATCCTACCAGAATGTGGGGAGTGCATAGATTGCAAATCAACCAAAAGCAACCGGTGTACTAAATTCCCTTTCAAGGTGTCTCCTTGGATGCCTCGAGATGGTACCACTCGATTCACTGACCAAAATGGAGAGATCATATACCACTTCTTGTTTATTTCAAGTTTCAGTGAGTACACTGTTGTGGACATTGCCAATGTAATAAAGATTGACCCAGAAATTCCTCCTCACAGGGCATGCCTTCTCGGATGTGGTGTTTCAACAGGGGTAGGTGCTGCTTGGAGAACTGCAGGTGTGGAACCAGGGTCTACAGTAGCTATTTTTGGGTTGGGATCCATTGGATTAGCAGTTGCAGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATAGGTGTGGACATCAACCcagaaaaatttgaaattgGAAAAAAGTTTGGGGTCACAGACTTTGTCCATGCTGGAGAATGTGGGACCAAACCTGTGAGCCAGGTTATCATAGAGATAACTGGTGGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAGTTGTTGTAGGAGTGGACAAGCCAGGAGCCAAGATAAGCCTCAGTTCTTTTGAGGTCCTTCATGACGGGAAGAGCCTCATGGGATCCTTATTTGGAGGTCTCAAACCCAAGTCTCATGTACCCATTCTCCTCAAACGTTACATGGACAAGGAATTGCAGTTGGATGAATTTGTCACTCATGAGGTGGAATTTAAGGATATCAACAAAGCTTTTGATTTATTGAGTAAAGGAGAGTGTCTTCGATGTGTGATTTGGATGGATAAATAA 1065 0.4413 MVAPPKPREVRIRIVCSSLCHSDITYRNIQDPPAIFPRILGHEATGVVESVGKDITEVTKGDVVIPVILPECGECIDCKSTKSNRCTKFPFKVSPWMPRDGTTRFTDQNGEIIYHFLFISSFSEYTVVDIANVIKIDPEIPPHRACLLGCGVSTGVGAAWRTAGVEPGSTVAIFGLGSIGLAVAEGARLCGATRIIGVDINPEKFEIGKKFGVTDFVHAGECGTKPVSQVIIEITGGGADYCFECVGMASLVHEAYASCRKGWGKTVVVGVDKPGAKISLSSFEVLHDGKSLMGSLFGGLKPKSHVPILLKRYMDKELQLDEFVTHEVEFKDINKAFDLLSKGECLRCVIWMDK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0612 354 Pfam Zinc-binding dehydrogenase 179 299 IPR013149 -
Ssu9g0612 354 Pfam Alcohol dehydrogenase GroES-like domain 8 136 IPR013154 -
Ssu9g0612 354 Gene3D - 155 295 - -
Ssu9g0612 354 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 140 315 IPR036291 -
Ssu9g0612 354 Gene3D - 2 347 - -
Ssu9g0612 354 SUPERFAMILY GroES-like 303 351 IPR011032 -
Ssu9g0612 354 PANTHER ALCOHOL DEHYDROGENASE 1 351 - -
Ssu9g0612 354 SUPERFAMILY GroES-like 2 174 IPR011032 -
Ssu9g0612 354 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 1 351 - -
Ssu9g0612 354 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 41 55 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0612 Ssu-Chr9 28450046 28453635 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0612 8 344 Monolignol Biosynthesis Gene Families AT2G21730 25.220 1.39e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0612 K00121 - gmx:100817521 696.041