Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0604 ATGGCGATCACAGTTTTGTCGCGATTTTTGGTATTGAAGAATATTGTGGACAAACCCACTAAGAAGCTCCCAAAAAAATTCACTAGAAAATATGGAGATGGAATGTCAATCCCGGTGTTTCTCAAGACTCCAGATGACACTGGATGGAAAATGTACTGGACCAAGCATGATGATGAGATTTGGTTTCAAAAGGGTTGGAAGGAGTTTGCCACATACTATTCTCTAGATCATGGGCACTTGTTGTTCTTTGAATATCAGGGAACTTTTCATTTTGATGTTCACATATTCAACAACGGTGCCCTTGAAATAGACTATCCTTCCCATGGTACTCATGATGGAATTGAAAAAGACAGCCTTGTGCAGATTAGTAATGATTCTGTTGAAAATTTGGATGAGCAATTTTCATGCCAAAAGACTAGAGCGAAATCCTCATCTCCTCAACCttgtaagaaaatgaaaaatagcatAACTACAAATGTTGAAAGAAGCCCCAGTGGGGTAAACTTGCACCAGCATGTCCAAACTAGAAGTACTAGCTCTCTAGAGGCAAAATTTATAAAGCAAACATTAGATGAAGATGAGGGTGAAGGCACTTTTAACACCGAATGCCCAAAAGTGGAGCAGTTAACTTCTACCGCTTTAAACAAAGCCACAACTTTCAGATCTGAACATCCCTCTTTCATGCTTGTCATGAAGCCATCCTTTATTAATGGAGATTACCTGGCCAGCTCTCTGCTGGTTGGCCCTCATTTGCAAGAGAAAATAAACTGCAACCTGGAGATGTTTGTATCTTTGAGCTCGTCAACAGAGAAGGTACAACGCTTGATGTTCATGTTTTCAGAGGTCACAGTAAGTGTTGATGTGTTTGAGCACATATGA 879 0.3936 MAITVLSRFLVLKNIVDKPTKKLPKKFTRKYGDGMSIPVFLKTPDDTGWKMYWTKHDDEIWFQKGWKEFATYYSLDHGHLLFFEYQGTFHFDVHIFNNGALEIDYPSHGTHDGIEKDSLVQISNDSVENLDEQFSCQKTRAKSSSPQPCKKMKNSITTNVERSPSGVNLHQHVQTRSTSSLEAKFIKQTLDEDEGEGTFNTECPKVEQLTSTALNKATTFRSEHPSFMLVMKPSFINGDYLASSLLVGPHLQEKINCNLEMFVSLSSSTEKVQRLMFMFSEVTVSVDVFEHI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0604 292 PANTHER B3 DOMAIN-CONTAINING 14 245 - -
Ssu9g0604 292 Gene3D - 9 99 IPR015300 -
Ssu9g0604 292 SMART B3_2 6 99 IPR003340 GO:0003677
Ssu9g0604 292 Pfam B3 DNA binding domain 22 98 IPR003340 GO:0003677
Ssu9g0604 292 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Ssu9g0604 292 SUPERFAMILY DNA-binding pseudobarrel domain 19 98 IPR015300 -
Ssu9g0604 292 CDD B3_DNA 23 97 IPR003340 GO:0003677
Ssu9g0604 292 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 14 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0604 Ssu-Chr9 28108611 28111721 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0604 10 265 B3 DNA Binding Superfamily AT3G18990 25.547 3.95e-21 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu9g0604 B3 9.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0604 - - gmx:100818507 347.051