Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0583 ATGGTTGCCGCCAAGAAAACAAAGAAGACCCATGAGAGTATCAACAACAGGCTCGCTCTTGTGATGAAGAGTGGGAAATATACTTTGGGTTATAAAACGGTTCTCAAATCCCTCAGGAATTCCaaagGGAAATTGATTATCATTGCCAACAATTGCCCACCATTGAGGAAATCTGAAATTGAGTACTATGCTATGTTGGCGAAGGTTGGAGTTCATCATTACAATGGAAACAATGTGGATTTGGGCACCGCATGTGGCAAATATTACAGAGTTTGCTGCCTCAGCATTATTGATCCCGgTGATTCTGATATCATCAAGACAATGCCTAGCGAGCAGTAG 339 0.4159 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKTMPSEQ 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0583 112 Gene3D - 2 108 IPR029064 -
Ssu9g0583 112 SUPERFAMILY L30e-like 13 107 IPR029064 -
Ssu9g0583 112 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 105 IPR004038 -
Ssu9g0583 112 PANTHER RIBOSOMAL PROTEIN L30 1 112 IPR039109 GO:0003723
Ssu9g0583 112 ProSitePatterns Ribosomal protein L30e signature 2. 80 100 IPR022991 -
Ssu9g0583 112 ProSitePatterns Ribosomal protein L30e signature 1. 24 48 IPR022991 -
Ssu9g0583 112 Hamap 50S ribosomal protein L30e [rpl30e]. 12 109 IPR000231 GO:0003723|GO:0003735|GO:0022625
Ssu9g0583 112 PANTHER 60S RIBOSOMAL PROTEIN L30 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0583 Ssu-Chr9 27330849 27332690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0583 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 84.821 1.71e-70 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0583 K02908 - mnt:21405348 226.868