Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0539 ATGGAGATGAACAATTTTACGAAAGAGGCTACATTGCCATTGAACCTCAACATTAAGGATAAGCATACGCTCCAATCCAAAGCCTTCAAAGCTCAATTATCCCCCAAGCAACCCTTTTTCATTGGTGTTGCTGGTGGAACCGCATCTGGGAAAACAACTGTATGTAACATGATAAATACACAACTTCGCGATCAACGAGTTGTCCTCATTACTCAAGACTCATTTTATTACTCATTGAGTGACAAGATGCTACAGAAAGTTAATGAGTACAATTTTGATCATCCTGATGCCTTTGATACGAAGCTTTTGCTTTCAACAttggagaaattaaaatgtGGACAACCTGTTACTATACCAAATTATGATTTCAACACCCATAAGAGAATTGAATCTGCACGTCAGGTTCATCCTGcagatatcataattttagaaGGGATATTAGTTCTTCATGATTCTGGTATCCGTAATCTTTTGAACATGAAGATCTTTGTTGATGAAGATTCTGATGTGCGCCTTGCACGGAGGATGCAACGTCTTGCTATTGACCGGGGGAGGAATATTGAGAATGTTCTAGACCAATATTCCAGATTTGTAAAGCCCAGTTTTGAAGATTTTGTATTGCCAACTAAAAAGTATGCTGATATTATCATTCCAAGTGGAGGAGATAATGATGTTGCTATTGACTTAATAGTACAGAACATACGTATGAAGCTTGGTCAACATGATTTGTGTAAAATATATcccaatatttttgttatattttcaaCATTTCAGATAAAGGGAATGCATACTCTTATCCGTGATGTTAAGGCAACAAAGCATGACTTTGTCTTCTACTCAGATCGTCTTATTAGACTGGTTGTCGAACATGGATTAGGTCATCTCCCTTTCACTGAAAAGCAGGTGATAACACCAACAGGATCTGTATACTCTGGTGTAGTTTTCTGTAGCAGGCTATGTGGAGTATCGGTCATTAGAAGTGGAGAAAGCATGGAAAATGCATTAAGAGCATGCTGTAAAGGGATCAAGATTGGTAAAATCCTTATTCATGGACATGGCACAAACGGTCGGCAGTTAATCTATGAGAAGCTACCATCAGACATTGCAAGTCGTCATGTGTTGCTACTTGATCCAGTTTTGGCCACAGGAAATTCTGCAGTCAAAGCTATCTCTCTACTTCTGAAGAAAGGTGTACCagaatctaatattatatttctaaatttagtAGCAGCACCACAAGGAATAAATGCAGTTTGTGAGAGATTTCCAATGATAAAACTTGTGACATCAGAGATTGATGCATCATTGAATGAGAATTCTCATGTGATCCCTGGCTTAGGGGAGTTTGGTGATCGTTACTTTGCCACTGATGATTAG 1377 0.3682 MEMNNFTKEATLPLNLNIKDKHTLQSKAFKAQLSPKQPFFIGVAGGTASGKTTVCNMINTQLRDQRVVLITQDSFYYSLSDKMLQKVNEYNFDHPDAFDTKLLLSTLEKLKCGQPVTIPNYDFNTHKRIESARQVHPADIIILEGILVLHDSGIRNLLNMKIFVDEDSDVRLARRMQRLAIDRGRNIENVLDQYSRFVKPSFEDFVLPTKKYADIIIPSGGDNDVAIDLIVQNIRMKLGQHDLCKIYPNIFVIFSTFQIKGMHTLIRDVKATKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYSGVVFCSRLCGVSVIRSGESMENALRACCKGIKIGKILIHGHGTNGRQLIYEKLPSDIASRHVLLLDPVLATGNSAVKAISLLLKKGVPESNIIFLNLVAAPQGINAVCERFPMIKLVTSEIDASLNENSHVIPGLGEFGDRYFATDD 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0539 458 SUPERFAMILY PRTase-like 240 456 IPR029057 -
Ssu9g0539 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 230 IPR027417 -
Ssu9g0539 458 TIGRFAM udk: uridine kinase 39 237 IPR000764 -
Ssu9g0539 458 Gene3D - 34 240 IPR027417 -
Ssu9g0539 458 PRINTS Uridine kinase signature 38 55 - -
Ssu9g0539 458 PRINTS Uridine kinase signature 113 128 - -
Ssu9g0539 458 PRINTS Uridine kinase signature 68 79 - -
Ssu9g0539 458 PRINTS Uridine kinase signature 169 179 - -
Ssu9g0539 458 PRINTS Uridine kinase signature 205 218 - -
Ssu9g0539 458 PRINTS Uridine kinase signature 183 194 - -
Ssu9g0539 458 CDD UMPK 40 235 IPR000764 -
Ssu9g0539 458 CDD PRTases_typeI 319 429 IPR000836 -
Ssu9g0539 458 Coils Coil 456 458 - -
Ssu9g0539 458 PANTHER URIDINE KINASE 20 454 - -
Ssu9g0539 458 PANTHER URIDINE KINASE-LIKE PROTEIN 5 20 454 - -
Ssu9g0539 458 Gene3D - 241 456 IPR029057 -
Ssu9g0539 458 Pfam Uracil phosphoribosyltransferase 255 456 - -
Ssu9g0539 458 Pfam Phosphoribulokinase / Uridine kinase family 40 226 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0539 Ssu-Chr9 25339699 25346038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0539 34 458 PRT Gene Family AT5G40870 72.535 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0539 K00876 - gmx:100803453 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0539 9 25339699 25346038 Ssu5g3464 5 85445356 85446603 ECH
Ssu9g0539 9 25339699 25346038 Ssu9g0539 9 25339699 25346038 ECH