Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0503 ATGAAAAATACGTGGAAGGAGAAATCCAGACTAAGGATGggTCTTAGTTGTGCCGTCCTCTGTAAAAAACGAAATAGGGGGGGAAGCATTCAGAATTTCAGATTCAGTGTCGTATTGCTGCCTCGTAAACAACAAACTGCAGAGACGAGAATTGTCCACTTTCTCCGGTTAGTTTCTGTAAGTTGTAACCGAACAGCTCCAAGTGATTTTAAAGCCCTATTAAAATTCCTACAGTTCTTCCGATTCTCCTCAGCTCCCAGATTGTCTTCTGTTGCTGCTGCATTCTTCCCCCTCACTTGTTTTcctttagtatattttgaacaCTGGTCAATGGAGGGTACTGAACCTGATGTAAATAGCCATCACCTGGAAGATGCAGAAAATGAATGTCCAATATCATCTGAGGTGGTGATTGATATGGGGCAGGAGAGTCAGACTCAAAACCCCAGTAATTCCTCTGTCATAGACACTAACAAGGTCATTGACACTGAGAATGAGTGTACAGGTCCAAATGTTTCTCCTGTTGACCATAGTCAGATGGAAATTAATGATGAATGCCAAACATCGAATCTTTTCCATGATGACAAATTTCATACTAATGTTGGTAGTGGACAGTTGTGTGAGAACCCCTGTGCTACCTCTGTTGATATATCAATGACTAGTACTGATGTAAAAAATGAGGAGGAAATATATGTGGCACCAAAGATTGGTATGGAGTTTGAATCAGAAGACAATGCTTACAAATGTTATAGCAAGTATGCTGTCCTGAAAGGTTTCAGCATAAGAAAGGATTTTGTCAACAAAAGTAGGATAAATGGTGCAGTGGTGTCCAGAAGATACACCTGCTATAGACAGGGTTATCGTCCTAACAAAAATGCTACATACTCAAGGAAATTGCAGCAGGAAACAAGAACTGGTTGTTTGGCACACATGACTATTGCTCGTCAGCCAAATGGCAAGTTTCGTGTCACTCATTTTGAAACTGAGCACAATCATGAGTTTGTAACACCCTGTACTGCTCATATGTTACCATCACAGAAAAGATTGAGTTTTGCTCAAGCTGTTGAAGCAAACATAACTGAGTCCGGATTGGATGGGGTACCAAAACTGGGAATGGGATTTGACTCAGAGGAGCATgcatatgaattttataatacatatgcTGGACGTGTAGGTTTCAGTGTAAGAAAAGATTATGTAAATAGGAGTAAAGTTGATGGTGCTGTGGCATCTAGACGGTTTACTTGCTTCAGAGAAGGTTTTCGGCAGAAAGACAAACGGGATATGAATGTAAAGAGACCTCGGAAGGAAACTAGGATTGGATGTTTAGCACAACTGGTAATTTCTCGCCAACCTGATGGTAGGTATCATGTTACTCACTTTGAAGAAAAGCATAATCACGAGCTTGTTGCTGCATTTAGAGTGCATATGTTAAGATCACAAAAGAGGTTAGCTGCAACTCAAGTTGAAAAGAACATTGTAGATGGATCTGATGTGCCACCTAAATCAGCCTCTGAATCCAATTGCAAGACTATTGAAGGCTTTGCTGATCTGGATTATGATACCATAGGTCGTGAATATAAACTACCTTTCACATGTTCAAGCAAAATAAGAGAGGGAGAAATTGAAAAGATTCAGCATCACTTCCAAATCAAGCAATCAAAGAATCCTTCTATCTTCTATGCTTTCCAGCTTGATGCTGATGatcaaataactaatatattttgGACTGATACAAAGATGATGGTAGACTACAGTGATTTTGGTGATGTTGTTTGTTTTGATAgtagttataaatattataaggactcCAGGCCATTTGTTCCGTTCCTTGGTATAAATAATCACCAGCAAATGACTATCTTTGGGGCTGCACTTCTTTATAATGAATCTATAGAATCTTTAAAGTGGCTGTTTCGAGTTTTCATTGAGACAATGTCTGGAAGCAAGCCAAAGACAATCCTTACAGATCATGATGTCATAACAGCTGAAGCAATTAATTCCATGTTACCTCAAACAAATCACCGAGTTTGTGTATGGCATGTCTATCAAGATGCCCTCAAGCAGCTGAATCATGTTTCTGTTGGATCTGGTTCTTTTGTAAATGATTTGAGAAGCTGCTTTTTTGATCATGAGGATGAGGATGATTTTGTTAATGCATGGAATGCTCTCCTGGACAAGTATGATCTGTGGGAAAATGAATGGTTGCAACAAATATATGGAAGCAGAGACCGATGGGCCGTAGCATATGGAAGACAAATTTTTTGCGCAGACATGGTAAGCATGCTACCGAGTGAAAATCTTACTGGCAACCTGAAAAAGTATCTAAAGCATGACTCAGACGTTCTTCCACTTTTCAAGTATCTTGGGAAGGTTGTCACTGATTGGCACTACAAGGAATTAGAAGCCAATTATGACATGAGCCAGCATATGCCACCCCTGATGGGGGATATCATTACGTTAAAGCATGCAAGAGCTCCATACACACCAAAGATATTTGAGTTATTTCAGAAAGAATATGAAGCATTTTTAAATCTAGTGATAAAGCATTGCACTGAGAGTGGATCATTGTATAATTATAAAGTTAGCGTATATGAACAGGTACGAGAGTATACGGTTACTTTTGATTCTTCTAATGAGACAATCAGTTGCAGCTGTATGAAATTTCAGTATGTGGGAATCTTATGCTGCCATGCATTAAAAGTTCTTGACTATAGGAACATAAGGATAGTTCCATCCCGGTACATCTTAAAGAGATGGACAAAAGATGCTAGAGTTTGA 2781 0.3826 MKNTWKEKSRLRMGLSCAVLCKKRNRGGSIQNFRFSVVLLPRKQQTAETRIVHFLRLVSVSCNRTAPSDFKALLKFLQFFRFSSAPRLSSVAAAFFPLTCFPLVYFEHWSMEGTEPDVNSHHLEDAENECPISSEVVIDMGQESQTQNPSNSSVIDTNKVIDTENECTGPNVSPVDHSQMEINDECQTSNLFHDDKFHTNVGSGQLCENPCATSVDISMTSTDVKNEEEIYVAPKIGMEFESEDNAYKCYSKYAVLKGFSIRKDFVNKSRINGAVVSRRYTCYRQGYRPNKNATYSRKLQQETRTGCLAHMTIARQPNGKFRVTHFETEHNHEFVTPCTAHMLPSQKRLSFAQAVEANITESGLDGVPKLGMGFDSEEHAYEFYNTYAGRVGFSVRKDYVNRSKVDGAVASRRFTCFREGFRQKDKRDMNVKRPRKETRIGCLAQLVISRQPDGRYHVTHFEEKHNHELVAAFRVHMLRSQKRLAATQVEKNIVDGSDVPPKSASESNCKTIEGFADLDYDTIGREYKLPFTCSSKIREGEIEKIQHHFQIKQSKNPSIFYAFQLDADDQITNIFWTDTKMMVDYSDFGDVVCFDSSYKYYKDSRPFVPFLGINNHQQMTIFGAALLYNESIESLKWLFRVFIETMSGSKPKTILTDHDVITAEAINSMLPQTNHRVCVWHVYQDALKQLNHVSVGSGSFVNDLRSCFFDHEDEDDFVNAWNALLDKYDLWENEWLQQIYGSRDRWAVAYGRQIFCADMVSMLPSENLTGNLKKYLKHDSDVLPLFKYLGKVVTDWHYKELEANYDMSQHMPPLMGDIITLKHARAPYTPKIFELFQKEYEAFLNLVIKHCTESGSLYNYKVSVYEQVREYTVTFDSSNETISCSCMKFQYVGILCCHALKVLDYRNIRIVPSRYILKRWTKDARV 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0503 926 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 187 350 - -
Ssu9g0503 926 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 358 926 - -
Ssu9g0503 926 SMART 26again6 882 909 IPR006564 GO:0008270
Ssu9g0503 926 Pfam SWIM zinc finger 871 906 IPR007527 GO:0008270
Ssu9g0503 926 Pfam FAR1 DNA-binding domain 250 335 IPR004330 -
Ssu9g0503 926 Pfam FAR1 DNA-binding domain 382 470 IPR004330 -
Ssu9g0503 926 Pfam MULE transposase domain 591 684 IPR018289 -
Ssu9g0503 926 ProSiteProfiles Zinc finger SWIM-type profile. 871 907 IPR007527 GO:0008270
Ssu9g0503 926 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 187 350 IPR031052 GO:0006355
Ssu9g0503 926 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 358 926 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0503 Ssu-Chr9 24161889 24168506 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu9g0503 MULE 2.2e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0503 K17604 - gmx:102659753 1476.46