Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0479 ATGAATTCTTCTTTTCTATCACCCATTATCCCAAAGAAAGATGGTGCTGACTCTACTGGCAGCAACTCCTTAAGAGCGCTTGCATTAATTGGAGCTGGTGTCTCGGGGCTTTTAGGTTTTTCAACAACGGCATTAGCTGATGAAGCTGAGCATGGCCTGGCATGTCCAAGCTATCCATGGCCACACAAGGGCATCCTCAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTCTATGTCTTTGATATCATACCGTGATTTAGTTGGTGTTGCTTATACAGAAGAAGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGACGTTTACACGCCCTGGTAAACTCAGTGATCGCTTTCCTCAGCCATATGCAAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGAGCCTATCCTCCAGATCTTAGTCTTATTACCAAAGCTCGTCACAGTGGTCAGAACTATGTGTTTGCACTTCTAACTGGTTACCGTGACCCTCCTGCTGGCGTTTCAaTTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGCGGGGCCATTGCTATGCCTAAAATGCTTAATGATGGTGCTGTTGAATATGAAGATGGTACCCCTGCTACAGAATCCCAGATGGGTAAAGATGTTGTGTCATTCCTGACTTGGGCTGCTGAACCCGAGATGGAAGAGAGAAAACTGATGGGATTTAAATGGATATTTGTTCTATCGCTGGCATTACTTCAAGCTGCCTATTACCGTCGCCTTCGGTGGTCTGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAACTAG 870 0.4517 MNSSFLSPIIPKKDGADSTGSNSLRALALIGAGVSGLLGFSTTALADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQEVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGETFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLITKARHSGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATESQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0479 289 Gene3D - 49 244 IPR036909 GO:0009055|GO:0020037
Ssu9g0479 289 SUPERFAMILY Cytochrome c 53 243 IPR036909 GO:0009055|GO:0020037
Ssu9g0479 289 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 244 288 IPR021157 -
Ssu9g0479 289 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 12 289 - -
Ssu9g0479 289 PANTHER CYTOCHROME C1 12 289 IPR002326 GO:0009055|GO:0020037
Ssu9g0479 289 Gene3D - 245 288 - -
Ssu9g0479 289 ProSiteProfiles Cytochrome c family profile. 72 179 IPR009056 GO:0009055|GO:0020037
Ssu9g0479 289 PRINTS Cytochrome C1 signature 225 244 IPR002326 GO:0009055|GO:0020037
Ssu9g0479 289 PRINTS Cytochrome C1 signature 58 77 IPR002326 GO:0009055|GO:0020037
Ssu9g0479 289 PRINTS Cytochrome C1 signature 156 180 IPR002326 GO:0009055|GO:0020037
Ssu9g0479 289 PRINTS Cytochrome C1 signature 194 205 IPR002326 GO:0009055|GO:0020037
Ssu9g0479 289 PRINTS Cytochrome C1 signature 205 224 IPR002326 GO:0009055|GO:0020037
Ssu9g0479 289 PRINTS Cytochrome C1 signature 244 259 IPR002326 GO:0009055|GO:0020037
Ssu9g0479 289 PRINTS Cytochrome C1 signature 78 97 IPR002326 GO:0009055|GO:0020037
Ssu9g0479 289 PRINTS Cytochrome C1 signature 123 143 IPR002326 GO:0009055|GO:0020037
Ssu9g0479 289 Pfam Cytochrome C1 family 60 276 IPR002326 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0479 Ssu-Chr9 23469316 23481184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0479 2 289 Chloroplast and Mitochondria Gene Families AT3G27240 84.880 6.79e-171 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0479 K00413 - gmx:100803087 553.903