Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0459 ATGAGGACTTTCATCTTTACTTTTCTCGGTTTTGCTTTAGTGGGTTTAGAAGATGATCTTGAATACCAACTGATTGTGGGTTGCAATGCGTTGTCAATtgacattgaaaataaaattgttgttattaacaGTTTTGTTTGTGACAAGTATCACTTGAAATTTCCGTTGGTGCATCACCCGATTGATTACACACACATTGTTAAGAAGGCATTTAGTTTTGGCAAAAAGAGTGTTCTGTTTTTCAACATTGGTGGTGGAATTTTTTGTGTTTCTCATCTCACCATTGAGGAAGGTTTTGCTTTGCCCAATCAAAGAGGAAGGCCACCAGAATTGCAGGATTTAGTGGGGATCCACTCTATTCAGCAACTTGTTGATCTCCCTTGTGGGTTATCCCTTCTTGGTCACTTTAGAGGAACCAAAGATGCAAAGAAACTGTTTGAGGAATTGCTTGTGAGAAATATGGTGTCATGGAACATTCTGATTTGTGTGGCAGATGTGAGTAAAGCAAGAGCGGTTGCTTTTGTAAGCGAGGAGAATGTGAGATCGAGAAAAAACAGGGTTGGAATGCATGGGAGATTTAACTCAATTCACCCCGATCTAGTCTTTCAATGA 612 0.3824 MRTFIFTFLGFALVGLEDDLEYQLIVGCNALSIDIENKIVVINSFVCDKYHLKFPLVHHPIDYTHIVKKAFSFGKKSVLFFNIGGGIFCVSHLTIEEGFALPNQRGRPPELQDLVGIHSIQQLVDLPCGLSLLGHFRGTKDAKKLFEELLVRNMVSWNILICVADVSKARAVAFVSEENVRSRKNRVGMHGRFNSIHPDLVFQ 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0459 203 PANTHER PRE-MRNA SPLICING FACTOR PRP31 14 69 IPR027105 GO:0000244|GO:0000398|GO:0046540
Ssu9g0459 203 SUPERFAMILY Nop domain 18 70 IPR036070 -
Ssu9g0459 203 Gene3D - 12 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0459 Ssu-Chr9 22783260 22783871 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0459 68 99 Calmodulin-binding Proteins AT5G02500 65.625 6.40e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0459 K12844 - gmx:100818919 88.5817