Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0458 ATGAAGACTTTCTCCCCAATTCAACCACCCCACTATTTTCGTTGTACAAGATTTTTCTCTCACACTACCACAAGGACTCAAATTTCTTTTCCTGCAAAGGTCTTCTTTTGCCAGGCAAAATCTGGCATAGATGGCTCATTGAATTCAAAAGTGGTGTCTCCCACTTTGTTAGCAGCAGAAAAGGAAGAAGCCAAGGCTGTGTTGACCTTGTTTTTGAAGAAACAAGGTTTGAGCAATGCGGTTGCTGCAAGAACCATCAACAAGTCAGATCATTTTATTGATCACCTTGTCTCAAAGCTTCATTCTAAACACAAATCTTGGTATCTCGCAGGCAGAGAGCTCACAACACTGGAGATCAGAGATGCTCTTATCCCTTTTCTTGAATCTCTTTTTGAAGAGCATGGAGACATTCTAGTGGATGTAGTGGAAAACTATCCAAATCCACCAGTTAAGGATAAATCAGCTGTGCCAATTCCTCCTTCTAGTCCAGTGTTAGACTCTAAGAAACTTAAAGCTGTGTCTCGAGTGAGTGAAGTAGACCCGGATGGTGGCAATCTTCCCCCTCATATTGTCTATCTCATGGAACTTGGTATGGATATTGAGCAGATTAGGAGTATCACACGACGATTCCCATCTTTTGCCTACTATAGCCTGGAGGGTAAAATTAAGCCTGTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCAAAAGAGAACATTCCCACTATCCTCACTAAAAGGCCTCAATTATGTGGAATCAGTCTTTCTGAAAATCTTAAACCCACCATGAAGTTCTTAGAATCTTTGGGTGTTGACAAGAAGCAATGGCCAAAGGTGATCTATCGCTTCCCAGCCCTGCTAACTTATAGCAGGCAGAAAGTGAGGGAAAGCATAGATTTTCTCCTTGAATTGGGCCTCTCAGAAGAGAGTATAGGTAAGATTTTAACTCGCTGCCCCAATATTGTTAGTTACAGTGTAGAGGACAATCTCCGACCCACGGCTAAGTACTTCCGTTCTTTGGGGGTTGATGTTGGCATTCTTCTATTCAGATGCCCACAAAATTTTGGTCTTAGCATTGAAGCTAACCTAAAGCCTGTAACAGAATTCTTCTTGGAGAGAGGATACATTTTGGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACTTTCAGCTTGACTGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCACAGGTTACCCAAAATCTGAGCTGGTTAAGTTCCCTCAATATTTTGGATACAGTTTAGAGGAAAGGATTAAACCTAGATTTGCAATTATGAAAAAGTCTGGAGCAAAATTACTGCTGAACCAGGTTCTTTCACTGTCGAGCAGCAACTTTGAGGAGgccttgaaaaagaaaatgaagaaaatgcaAGTTAGTTAG 1416 0.4025 MKTFSPIQPPHYFRCTRFFSHTTTRTQISFPAKVFFCQAKSGIDGSLNSKVVSPTLLAAEKEEAKAVLTLFLKKQGLSNAVAARTINKSDHFIDHLVSKLHSKHKSWYLAGRELTTLEIRDALIPFLESLFEEHGDILVDVVENYPNPPVKDKSAVPIPPSSPVLDSKKLKAVSRVSEVDPDGGNLPPHIVYLMELGMDIEQIRSITRRFPSFAYYSLEGKIKPVVEFFLELGVPKENIPTILTKRPQLCGISLSENLKPTMKFLESLGVDKKQWPKVIYRFPALLTYSRQKVRESIDFLLELGLSEESIGKILTRCPNIVSYSVEDNLRPTAKYFRSLGVDVGILLFRCPQNFGLSIEANLKPVTEFFLERGYILEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPKSELVKFPQYFGYSLEERIKPRFAIMKKSGAKLLLNQVLSLSSSNFEEALKKKMKKMQVS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0458 471 SMART mt_12 276 306 IPR003690 GO:0003690|GO:0006355
Ssu9g0458 471 SMART mt_12 344 375 IPR003690 GO:0003690|GO:0006355
Ssu9g0458 471 SMART mt_12 380 411 IPR003690 GO:0003690|GO:0006355
Ssu9g0458 471 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Ssu9g0458 471 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Ssu9g0458 471 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Ssu9g0458 471 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Ssu9g0458 471 Gene3D Transcription termination factor 3, mitochondrial 249 467 IPR038538 -
Ssu9g0458 471 PANTHER CGI-12 PROTEIN-RELATED 24 469 IPR003690 GO:0003690|GO:0006355
Ssu9g0458 471 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 24 469 - -
Ssu9g0458 471 Pfam mTERF 350 458 IPR003690 GO:0003690|GO:0006355
Ssu9g0458 471 Pfam mTERF 192 371 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu9g0458 mTERF 1.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0458 K15032 K12177 gmx:100781900 854.358