Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0456 ATGATGTTCCAAGCTGGTTCAATGAGACATTTTTGTTACCTTTATCTTGTGGTTCTTTCATGGTTTTTGTTCTTCCCAAACACTTATCAATTACAAGCAGCTCAGACTCAAGCCTTGTTGCAGTTAAGAGTTTATCTAGAGTATCCCTCCTCTTTGCAAATTTGGGAATATTACAATGGGGACCTGTGTGGCCTTTCTCCATCTGCAAACATGAGCATTAAATGTGAAGGTGATGAGGTAACTGAGCTTAAAATTATGGGTGAAAAGTCTGTGAAGCCATCATGGTTCAATGGATTTGCAGTTCCTAATCAGACACTATCCATGAATTTCTCTATTGACTCCTTTTTCACCACTTTGACAAGGTTGACCAGCCTAAGGGTTCTTAGCTTGGTGTCCTTGGGGATTTGGGGGCCACTCCCTGATAAGATTCACAGTTTCTCTTTGCTTCAAGTTTTGGACTTGAGCTCCAATTTCTTATTTGGAGCTATCCCACCAAAAATGTCCACAATGGTAAAGCTTCATGCACTGACCCTTGatgacaattattttaatgcCACTATGCCTGATTGGTTTGATTCATTGTCTAATCTGAATATCTTGTGTTTGAAGAGCAATAGTTTAAAGGGTTCATTCCCCTCCTCACTCTGCAAAATTAAGACACTTGAAGTTATTTCCTTATCCCACAATGAGCTGTCTGGTGAGTTACCTGGTCTTAGTTCTCTCACTGGCCTACATGTTCTGGATTTAAGAGAAAACCATATAGAATCTGAACTACCATTGTTGTCTAAATCAGTGGTCACAGTTCTGCTTAGCTATAACTCATTCTCAGGAGAGATACCTAAGCAGTTTGGTGAACTGGATCAGCTTCAACATCTAGATCTTTCTTCAAATCACCTCAGCAAGACACCCCCATCTACCTTGTTTTCTCTGCCAAAAGTAAGTTATTTGAATCTGGCAAGCAATGTGCTAAGTGGGGCCCTCCCAGACAAACTTAATTGTGGGAGCAAGCTTGGGTTTGTGGACATTTCTTGTAACAAGTTAAGTGGTGGACTTCCTTCTTGCTTGGCCAATACTTCTGATGGTAGAGTTGTCAGATATGCTGGAAACTGTTTATCTGTTGATTCTCAGAACCAGCATAGAGGGTCTTATTGTAGAGAATCCAGCTCCGGATGGAAGAACTTTAAGGCATGGAAAGTAGCTGCAGCAATGGCCATCATTGTCGGACTAGTTCTTGTGCTTCTGGTGTGTGGAGTCTTGTTGTGGAAAAAATGTCACTCCAGAAAGACAACTGGGCAGGATGTGCTGCTAAAGATTGTTCAAGATAACTCCTCAACTGGGGTTTCATCTGAAATCCTTGCAAATGCCAGATTCATTTCTCAAACGGTGAAGCTAGGGAGACAAACAACTACTCCAACCTGTCGACAATTTTCAATAGAAGAATTGAAGGAAGCCACAAAAAACTTTGACTTGTCCACTTATATTGGTGGAGGCTCCATGGGGAAGCTGTACAAAGGTAAACTAGAGAATGGATCCTACGTGGCGATAAGATCCTTGGCTCTGTCAAAGAAATGCTCAATTCAAAATCTTAAAGCTAAATTGGATTTACTCTCAAAGCTTCAACACCCAAATTTGGTTAGCCTTTTGGGCCATTGTATTGATGGTGGTGGGCAAGATGATTCAAATTCCCACAAACTTCATCGTGTTTACGAGTATGTGCCAAATGGGAATTATCGTACCCATCTATCAGAATTTTCTGTAGAGAAGGCACTTAAGTGGTCTGATAGATTGGCAATTTTAATTGGAGTTGCAAAGGCAGTGCATTTCTTACATACTGGTGTTATACCTGGCTGTTTTGGTAACCAACTAAAGACGAAGAATATCTTACTTGATGAACACCGCATTCCAAAACTAAGTGACTATGGCATGTCCATCAttacaaaagaaatagaaaagtcTGAGGCAAAGGGTGAGAAGCCAAAACCATGCCTAAGGACAAAAGCGGAGGACGATGTTTATAAttttggattcatattgtttgaATCACTTGTTGGATCCATAGCGTGCGACAAAGGTGAAACATTTTTTCTAAATGAAAAGGCATCCTTTGGCAGTCAAGATGGTAGAAGAAAGATTGTGGATCCCATAGTGTTGACCACTTGCTCTCAAGAGTCATTATCAATTGCAATATCAATAACAACCAAATGCATATCTCCAGAATCTTCATTTCGTCCCTCTTTTGAGGATGTCCTATGGAACTTACAGTATGCAGCTCAAGTCCAAGCCACAGCAGATGCAGAGCAGAAATCAGATTCTCCATAA 2319 0.3997 MMFQAGSMRHFCYLYLVVLSWFLFFPNTYQLQAAQTQALLQLRVYLEYPSSLQIWEYYNGDLCGLSPSANMSIKCEGDEVTELKIMGEKSVKPSWFNGFAVPNQTLSMNFSIDSFFTTLTRLTSLRVLSLVSLGIWGPLPDKIHSFSLLQVLDLSSNFLFGAIPPKMSTMVKLHALTLDDNYFNATMPDWFDSLSNLNILCLKSNSLKGSFPSSLCKIKTLEVISLSHNELSGELPGLSSLTGLHVLDLRENHIESELPLLSKSVVTVLLSYNSFSGEIPKQFGELDQLQHLDLSSNHLSKTPPSTLFSLPKVSYLNLASNVLSGALPDKLNCGSKLGFVDISCNKLSGGLPSCLANTSDGRVVRYAGNCLSVDSQNQHRGSYCRESSSGWKNFKAWKVAAAMAIIVGLVLVLLVCGVLLWKKCHSRKTTGQDVLLKIVQDNSSTGVSSEILANARFISQTVKLGRQTTTPTCRQFSIEELKEATKNFDLSTYIGGGSMGKLYKGKLENGSYVAIRSLALSKKCSIQNLKAKLDLLSKLQHPNLVSLLGHCIDGGGQDDSNSHKLHRVYEYVPNGNYRTHLSEFSVEKALKWSDRLAILIGVAKAVHFLHTGVIPGCFGNQLKTKNILLDEHRIPKLSDYGMSIITKEIEKSEAKGEKPKPCLRTKAEDDVYNFGFILFESLVGSIACDKGETFFLNEKASFGSQDGRRKIVDPIVLTTCSQESLSIAISITTKCISPESSFRPSFEDVLWNLQYAAQVQATADAEQKSDSP 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0456 772 SUPERFAMILY L domain-like 102 372 - -
Ssu9g0456 772 Gene3D Phosphorylase Kinase; domain 1 450 571 - -
Ssu9g0456 772 ProSiteProfiles Leucine-rich repeat profile. 288 309 IPR001611 GO:0005515
Ssu9g0456 772 ProSiteProfiles Leucine-rich repeat profile. 220 242 IPR001611 GO:0005515
Ssu9g0456 772 Gene3D Ribonuclease Inhibitor 32 263 IPR032675 -
Ssu9g0456 772 Pfam Protein tyrosine and serine/threonine kinase 490 750 IPR001245 GO:0004672|GO:0006468
Ssu9g0456 772 SUPERFAMILY Protein kinase-like (PK-like) 469 753 IPR011009 -
Ssu9g0456 772 Gene3D Transferase(Phosphotransferase) domain 1 572 771 - -
Ssu9g0456 772 SMART LRR_typ_2 241 263 IPR003591 -
Ssu9g0456 772 SMART LRR_typ_2 310 334 IPR003591 -
Ssu9g0456 772 SMART LRR_typ_2 286 309 IPR003591 -
Ssu9g0456 772 SMART LRR_typ_2 146 170 IPR003591 -
Ssu9g0456 772 Gene3D Ribonuclease Inhibitor 264 390 IPR032675 -
Ssu9g0456 772 PANTHER OS07G0166700 PROTEIN 6 770 IPR045272 GO:0004714|GO:0006468
Ssu9g0456 772 PANTHER INACTIVE LRR RECEPTOR-LIKE KINASE 6 770 - -
Ssu9g0456 772 Pfam Leucine rich repeat 172 231 IPR001611 GO:0005515
Ssu9g0456 772 Pfam Leucine rich repeat 266 323 IPR001611 GO:0005515
Ssu9g0456 772 ProSiteProfiles Protein kinase domain profile. 488 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0456 Ssu-Chr9 22713135 22719209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0456 8 701 Miscellaneous Gene Families AT5G14210 56.818 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Ssu9g0456 PK_Tyr_Ser-Thr 1.4e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0456 - - gmx:100780663 1304.27