Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0444 ATGAGTGAGGAATCTAGTGTGCTTAAAGAAAGCACGTCAATCAATGACAATATGGAGGAAGAGGTTGAAAGAGATCCAGAAAGCAATCCACTGAATCAGCCACtgctaaagaggaacaagactTTGTCTTCCAATCCACTTGCTCTGGTTGGAGCAAAAGTTTCCTACATAGAAAGCTTGGACTATGAGATCAATGAGAATGACCTGTTCAAACAGGATTGGAGGAGCAGATCAAGAGCTCAAGTGTTGCAATACATATTCTTAAAATGGTCTCTGGCATTCCTTGTTGGTCTTCTCACTGGGGTCATAGCCACTCTTATCAATCTTGCTGTTGAGAACATTGCAGGGTACAAGCTTCTTGCTGTTGTCAAATATATCCGAAAAGAAAGGTACTTGAAGGGTTTCCTATATTTCACGGGCATTAATTTCCTCTTGACATTTGTTGCTGCTAttctgtgtgtgtgttttgcaCCCACAGCTGCTGGACCTGGAATACCAGAAATCAAAGCTTACCTTAATGGGGTTGATACTCCCAACATGTATGGTGCCACAACATTGTTTGTTAAGATAATCGGTAGCATTGGAGCTGTATCTGCAGGGCTAGATTTAGGAAAAGAAGGTCCCTTGGTACACATTGGCAGCTGCATTGCTTCCTTACTAGGCCAAGGAGGCCCTGACAATTACAGGATCAAGTGGCGCTGGCTGCGGTATTTCAACAATGACCGTGACCGTCGCGATCTTATCACCTGTGGTGCTTCTTCAGGGGTTTGCGCAGCTTTCAGGGCACCTGTGGGAGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACTTGGTGGAGAAGTGCTCTCCTCTGGAGAACATTTTTCAGCACAgctgtggtggtggtagtgctAAGGGCCACTATTGAACTTTGCCACAAAGACAAATGTGGCCTTTTTGGTGAAGGAGGGCTCATCATGTATGATGTGAGCAATGTCACTGTGAGGTACAACGTGATGGATATCATCCCTGTTGTTATCATTGGAGTCCTTGGTGGGGTATTGGGAAGCCTTTACAACTATCTTCTCCATAAGGTCCTCCGTCTCTACAATCTCATCAATCAGAAAGGAAAAATGTATAAGCTCCTCCTCAGTCTTTCAGTTGCACTCTTTACATCAGTCTGCCAATATGGTCTCCCATTCCTAGCAAAATGTACCCCTTGTAATCCATCCCTTCCAGAGTCTGTCTGCCCCACCAACGGGCGTTCTGGAAACTTCAAACAATTCAACTGCCCAAATGGCTACTACAATGATCTTGCTACACTGCTTCTGACCACCAATGATGATGCTGTTAGAAACATATTCTCAACCAACACTCCTCTTGAATACCAACCCTCCTCCATCCTAATTTTCTTTGCACTCTATTGCATACTAGGACTAATCACCTTTGGAATTGCTGTGCCATCAGGGCTCTTCCTCCCAATCATTCTCATGGGTTCGGGTTACGGCCGCCTTCTTGGGATCATCATGGGGCCTCATACAAACATTGATCAAGGGCTGTTTGCAGTCCTTGGTGCAGCCTCACTCATGGCTGGATCTATGAGAATGACTGTGTCCCTTTGTGTGATCTTCCTTGAGCTAACCAACAACCTTCTCCTACTACCAATAACCATGATTGTTCTCCTCATTGCCAAAACTGTTGGAGACAGTTTCAACCCAAGCATCTATGAGATCATACTGCACTTGAAAGGCCTCCCTTTCATGGATGCAAACCCTGAGCCATGGATGAGAAACCTCACTGTGGGAGAGCTTGTTGATGTGAAGCCAGCAGTGGTTAGCTTTAGAGGAGTAGAAAAGGTAGCCAATATAGTCGAAGCCTTGAAAAACACTACACATAATGGTTTTCCTGTCATGGATGGTGGGTTGGTGCCACCAACAGGAGTGGCCAGCGAGGCAACAGAACTGCATGGAATCATTCTAAGAGCACACCTTATCCAAGTGCTAAAGAAGAAGTGGTTCTTGAAGGAGAGAAGGAGAACTGAGGAGTGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGGAATATTGAAGATGTGGCTGTGACTAAAGAAGAAATGGAGATGTTCGTTGATCTACATCCTCTCACCAATACAACTCCCTATACAGTGCTAGAGAGTATGTCAGTAGCAAAAGCAATGGTTCTCTTCAGACAAGTAGGACTTCGCCATATGCTTGTTGTACCAAAGTATCAAGGATCTGGGGTATATCCTGTGATTGGGATCTTGACCAGGCAGGATCTACTGGCCTACAACATTCTCACAGTGTTTCCTCACCTGGCAAAATCAAAGAGGAAGTGA 2349 0.4406 MSEESSVLKESTSINDNMEEEVERDPESNPLNQPLLKRNKTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRSRSRAQVLQYIFLKWSLAFLVGLLTGVIATLINLAVENIAGYKLLAVVKYIRKERYLKGFLYFTGINFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLFVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRATIELCHKDKCGLFGEGGLIMYDVSNVTVRYNVMDIIPVVIIGVLGGVLGSLYNYLLHKVLRLYNLINQKGKMYKLLLSLSVALFTSVCQYGLPFLAKCTPCNPSLPESVCPTNGRSGNFKQFNCPNGYYNDLATLLLTTNDDAVRNIFSTNTPLEYQPSSILIFFALYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIIMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPAVVSFRGVEKVANIVEALKNTTHNGFPVMDGGLVPPTGVASEATELHGIILRAHLIQVLKKKWFLKERRRTEEWEVREKFTWVELAEREGNIEDVAVTKEEMEMFVDLHPLTNTTPYTVLESMSVAKAMVLFRQVGLRHMLVVPKYQGSGVYPVIGILTRQDLLAYNILTVFPHLAKSKRK 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0444 782 SUPERFAMILY Clc chloride channel 67 582 IPR014743 -
Ssu9g0444 782 PRINTS Chloride channel signature 253 272 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu9g0444 782 PRINTS Chloride channel signature 479 499 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu9g0444 782 PRINTS Chloride channel signature 529 548 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu9g0444 782 PRINTS Chloride channel signature 189 208 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu9g0444 782 PRINTS Chloride channel signature 567 581 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu9g0444 782 PRINTS Chloride channel signature 511 527 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu9g0444 782 PRINTS Chloride channel signature 158 175 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu9g0444 782 Pfam CBS domain 715 767 IPR000644 -
Ssu9g0444 782 SMART cbs_1 716 769 IPR000644 -
Ssu9g0444 782 SMART cbs_1 602 661 IPR000644 -
Ssu9g0444 782 SUPERFAMILY CBS-domain pair 584 767 IPR046342 -
Ssu9g0444 782 ProSiteProfiles CBS domain profile. 713 779 IPR000644 -
Ssu9g0444 782 PANTHER CHLORIDE CHANNEL PROTEIN 1 781 - -
Ssu9g0444 782 PRINTS Plant CLC chloride channel signature 274 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ssu9g0444 782 PRINTS Plant CLC chloride channel signature 306 313 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ssu9g0444 782 PRINTS Plant CLC chloride channel signature 288 298 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ssu9g0444 782 PRINTS Plant CLC chloride channel signature 63 71 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ssu9g0444 782 PRINTS Plant CLC chloride channel signature 431 447 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ssu9g0444 782 MobiDBLite consensus disorder prediction 1 36 - -
Ssu9g0444 782 Pfam Voltage gated chloride channel 146 560 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu9g0444 782 CDD CBS_pair_voltage-gated_CLC_euk_bac 600 767 - -
Ssu9g0444 782 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 781 - -
Ssu9g0444 782 Gene3D Clc chloride channel 81 582 - -
Ssu9g0444 782 Gene3D - 583 772 IPR046342 -
Ssu9g0444 782 CDD ClC_6_like 58 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0444 Ssu-Chr9 22479806 22484075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0444 25 780 Ion Channels AT3G27170 80.026 0.0 1248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0444 K05016 - gmx:778094 1431.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1944 4 36964356 36968714 Ssu9g0444 9 22479806 22484075 PCT