Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0439 ATGGAGGAAGCGAAGGAAAAGAGTTGGAGAATGGAAGTGGAGGAAAAGCTGAAGAGGCTGCAATCTCTTCTGTTCGGTGCAGAACGTGCTCTCCAAAACGAGGAGTTCTCCTCCGCTTACGTCCTTGCGCTTCGTCTCCTCGGATTCCTCGACGCGCAGTGCCACTCCGACGCCGACGAAGCCTTCGTCCAACCGATTCGCCGCGACGCACTCGCCAAGCTCCACGCCGCTCGCCGATCCCTCACTCCTCAATCTGATCGCCAAGCTTTTGAGCAAGCAAAGAAGTCTCCAGGATGTGTTTTTGGCACAACAAGAGATATTGACATTGAGAAGATTCGGAATTCAAAATACTTTCAAGCTCTTGTCAAGCAATCTAAGGAAAAAGATGAGCATCAATTGgTTGATCACCTGGGGAAACAGGACAACGCAGGCAGCAAAGCCTCGAAGCAAATGGTGCAAGCTAAGTTGCCATCCATGTATGGGAAAAGCAGCTTGAGGACTAGCAATGGTTCCAAGAGTTTTTTgaacatgaaaaataatatctctGAGGACTGCATGATTCTTGATAGGCCTCAATCTCATGCCAGCCATACAAAGTGTCCTGGTGTATCTTCTGCCTTGCAAGttgaaggagaagaaagagCTTTTGGAAACACTCTCTCCACAAAACGTGTACACTTAGAAAATAATAGTCCCAGAGTTGGATATGTGAAGTCACCTTCAAGTAAGGAGGAAGTTAACCCTGATGTTTGTGGCAACGGGTTTGTTACTGCTAGAGCAAAACtgGAAATGGAAGCAAAGCAGAAGCCAGGACTAGGTGGTTCACCCAGTGCCTCTGTCTCACGACAATGTGATAACAATCCTGCCAACAGGTTGTATGGTGGGAGATCATATGGCGTTTCACGACGTGGCTTCCGTGGTAATTTTGTTCCCCCTATTAAATCCAATGGGAACAATGCCGGAAATATGAGCTCACGCACTGCTGGAAAATGTGATGATTCTTTAGATGACACTACGAAGAAATGTTTGGAAATCCTGTGTGGTCCTGATGGAGAGCTTCCTGAGAAATTGAGGAATTTGGAACCTCGCCTCATTGAACATGTTAGTAACGAGATTATGGATAGAGATCCTAATGTCCGTTGGAATGATATTGCTGGATTGGAGCATGCCAAGAAATGTGTCTATGAGATGGTCATATTTCCTTTGCAACGTCCTGACATATTCCAGGGCTGTCGTTCCCCTGGGAGGGGTCTGCTTCTATTTGGTCCACCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCGAAGGCAACCTTCTTTTACATATCTGCAAGTTCGTTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCCCTCTTTGGAGTTGCCAGTTGTCGTCAGCCAGCAgtaatttttgttgatgaaataGATTCACTCCTGTCTCAGCGTAAGTCAGACGGTGAGCATGAATCAAGTAGACGGCTAAAGACGCAGTTTCTCATTGAAATGGAAGGCTTTGACAGTGGTAGCGAGCAAATTCTGCTTATAGGGGCAACAAATCGTCCTCAAGAGCTTGATGAAGCAGCACGAAGGAGACTTACTAAAAGACTTTATATTCCCCTGCCATCCTCAGAGGCAAGAGCTTGGATTGTACGTAACCTTCTAGAAAAAGATGGATTATTCAAGCTATCAAACAAGGAAATGGATATCATATGCAACTTAACCGAAGGTTATTCAGGATCAGACGTGAAAAACTTGGTGAAGGATGCTTCTATGGGTCCCCTAAGAGAGGCTTTAAGGCAAGGCATAGAAATTACAAAGTTGAAAATGGAGGATATGCGGCCTGTAACTCTTCAGGACTTCGAGAATTCCCTCCAACAGGTGAGGCCTTCTGTTTCTCCAAATGAACTTGGCACTTATGATCAATGGAACAAGCAATTTGGAAGCCTGTCACTGTAG 1980 0.446 MEEAKEKSWRMEVEEKLKRLQSLLFGAERALQNEEFSSAYVLALRLLGFLDAQCHSDADEAFVQPIRRDALAKLHAARRSLTPQSDRQAFEQAKKSPGCVFGTTRDIDIEKIRNSKYFQALVKQSKEKDEHQLVDHLGKQDNAGSKASKQMVQAKLPSMYGKSSLRTSNGSKSFLNMKNNISEDCMILDRPQSHASHTKCPGVSSALQVEGEERAFGNTLSTKRVHLENNSPRVGYVKSPSSKEEVNPDVCGNGFVTARAKLEMEAKQKPGLGGSPSASVSRQCDNNPANRLYGGRSYGVSRRGFRGNFVPPIKSNGNNAGNMSSRTAGKCDDSLDDTTKKCLEILCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWNDIAGLEHAKKCVYEMVIFPLQRPDIFQGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIVRNLLEKDGLFKLSNKEMDIICNLTEGYSGSDVKNLVKDASMGPLREALRQGIEITKLKMEDMRPVTLQDFENSLQQVRPSVSPNELGTYDQWNKQFGSLSL 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0439 659 Pfam Vps4 C terminal oligomerisation domain 621 655 IPR015415 -
Ssu9g0439 659 Gene3D - 549 635 - -
Ssu9g0439 659 PANTHER AAA DOMAIN-CONTAINING 65 656 - -
Ssu9g0439 659 Pfam ATPase family associated with various cellular activities (AAA) 418 548 IPR003959 GO:0005524|GO:0016887
Ssu9g0439 659 ProSitePatterns AAA-protein family signature. 520 539 IPR003960 GO:0005524|GO:0016887
Ssu9g0439 659 MobiDBLite consensus disorder prediction 312 329 - -
Ssu9g0439 659 PANTHER FIDGETIN-LIKE PROTEIN 1 65 656 - -
Ssu9g0439 659 MobiDBLite consensus disorder prediction 274 290 - -
Ssu9g0439 659 MobiDBLite consensus disorder prediction 268 295 - -
Ssu9g0439 659 MobiDBLite consensus disorder prediction 309 331 - -
Ssu9g0439 659 Gene3D - 377 651 IPR027417 -
Ssu9g0439 659 SMART AAA_5 414 550 IPR003593 -
Ssu9g0439 659 Coils Coil 10 30 - -
Ssu9g0439 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 654 IPR027417 -
Ssu9g0439 659 CDD AAA 411 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0439 Ssu-Chr9 22031523 22037507 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0439 327 657 Calmodulin-binding Proteins AT3G56690 30.205 2.02e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0439 K22766 - gmx:100789161 1178.7