Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0419 ATGGCGAGGAAGCGAAAACAGCCACCTCAACCCTCTCAATCCGAAGAACCCCCACTCAAAcagcagcagcaacaacaagAACCCCAATTCGATGCAGAAGCAGAGTACGAAGAGGAACAATCCGAAGAAGAAGAAAGCGAAGAAGAAGCAAAACCAAACAACGAAACACCGAAATTGCCCTCCACGTCATCCTCCTCCCCCGCCGCTGCCGCCgccgacgacgacgacgacgagcCCATCTGGAACCTTCTAGAACCCCTCGGCAAGGACGAGATCGCGAAGCTCCTCTGCGAGGCCGCCTCCCGGCACCGCGACGTGGCGGAGCGGATCCGCCTCGCCGCCGACGCCGACCCGGCGCACCGCAAGATCTTCGTCCACGGCCTCGGCTGGGACGCCACCGCCGACACCCTCGCCGCCGCGTTCCGCCCCTACGGCGAGATCGAGGACTGCAAGGCCGTAGCCGACAAGGCCACCGGCAAGTCCAAGGGCTACGGCTTCGTCCTTTTCAAGACCCGCCGCGGCGCCTGCAACGCGCTCCGCGAGCCGCAGAAAAGGATCGGCAACCGCACCGCCGCCTGCCAGCTGGCGTCGGTCGGCCCGGTCCAACCATCGCCGCACACTGTGGCCCCGGCGTTGGGGGCTTCGGAATTCATGCAGAGGAAGATCTACGTGAGCAACGTGGGCGCGGAATTGGACCCGCAGAGGCTTCTTGCGTTTTTTGCGCGGTTCGGAGAGATTGAGGAAGGGCCTTTGGGGCTTGACAAGGTCACCGGGAAGCCAAAGGGGTtctgtttgtttgtttataagAGCGTGGAGGGTGCGAAGAGGGCATTGGAGGTGCCGCACAAGAAGTTTGAGGGGCATATTTTGCATTGCCAGAGGGCAATTGATGGTCCCAAGCAACAGCGGGTGGTGCAGGGTAGTTCTCAGAGTGGTGGATTTGTTGGTGGTGCGGTGGCGGTGCCGGGGCACTTGATGGCTCCGGCTGGGCCGTTGGTTGGAGGAGTTTCTCCGGTGAATCCGGCGATTGGGCAGGCGCTGACGGCGCTGCTGGCGTCTAGGGGGGCCGGGTTGCAGTTGAATGGGTTGTTGGGGATGGGGTCGCCGGCGGCAGCGGTGGCATTGAACCCTGGTGGGTATGGTGGACAGGGGAGTGTGAATCCAGGGGGTGTTGGTGTTGTGGGGTATGGGAATCAACTAGGGCTGCAGAGTGCATATGGAAGCCAGCAGCAGGTGGGGATAGGTGGATCTGGAAGAgggcagcagcagcagcagcagcatgGTGTTGGACAGTATGGTGGTGTTGTCCCTTACATGGGTCACTAG 1326 0.5799 MARKRKQPPQPSQSEEPPLKQQQQQQEPQFDAEAEYEEEQSEEEESEEEAKPNNETPKLPSTSSSSPAAAAADDDDDEPIWNLLEPLGKDEIAKLLCEAASRHRDVAERIRLAADADPAHRKIFVHGLGWDATADTLAAAFRPYGEIEDCKAVADKATGKSKGYGFVLFKTRRGACNALREPQKRIGNRTAACQLASVGPVQPSPHTVAPALGASEFMQRKIYVSNVGAELDPQRLLAFFARFGEIEEGPLGLDKVTGKPKGFCLFVYKSVEGAKRALEVPHKKFEGHILHCQRAIDGPKQQRVVQGSSQSGGFVGGAVAVPGHLMAPAGPLVGGVSPVNPAIGQALTALLASRGAGLQLNGLLGMGSPAAAVALNPGGYGGQGSVNPGGVGVVGYGNQLGLQSAYGSQQQVGIGGSGRGQQQQQQHGVGQYGGVVPYMGH 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0419 441 Coils Coil 29 49 - -
Ssu9g0419 441 MobiDBLite consensus disorder prediction 413 433 - -
Ssu9g0419 441 Gene3D - 3 203 IPR012677 -
Ssu9g0419 441 Gene3D - 213 319 IPR012677 -
Ssu9g0419 441 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 12 411 - -
Ssu9g0419 441 SUPERFAMILY RNA-binding domain, RBD 115 203 IPR035979 GO:0003676
Ssu9g0419 441 MobiDBLite consensus disorder prediction 16 30 - -
Ssu9g0419 441 SUPERFAMILY RNA-binding domain, RBD 220 315 IPR035979 GO:0003676
Ssu9g0419 441 MobiDBLite consensus disorder prediction 1 82 - -
Ssu9g0419 441 PANTHER UBP1-ASSOCIATED PROTEIN 2A 12 411 - -
Ssu9g0419 441 CDD RRM_RBM24_RBM38_like 220 295 - -
Ssu9g0419 441 MobiDBLite consensus disorder prediction 31 50 - -
Ssu9g0419 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 229 IPR000504 GO:0003723
Ssu9g0419 441 MobiDBLite consensus disorder prediction 55 69 - -
Ssu9g0419 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 290 IPR000504 GO:0003723
Ssu9g0419 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 190 IPR000504 GO:0003723
Ssu9g0419 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 309 IPR000504 GO:0003723
Ssu9g0419 441 SMART rrm1_1 221 293 IPR000504 GO:0003723
Ssu9g0419 441 SMART rrm1_1 122 194 IPR000504 GO:0003723
Ssu9g0419 441 MobiDBLite consensus disorder prediction 413 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0419 Ssu-Chr9 21226723 21228048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0419 219 299 C2H2 Transcription Factor Family AT2G19380 35.802 5.66e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0419 K12741 - gmx:100784200 416.772