Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0413 ATGGATCATTACAAGGTCCTCGGCTTGTACCGAACCGCGAGCAAGGAAGAAATCAAAGCCGCGTTCAAGAAACTAGCGTTTCAGTTCCACCCGGACAAGCATTCCCAATCGCCGAAGGCCGTTAGGGAAAACGCCACAATTCGATTCAAGCAGGTCTCCGAGGCGTACGAGGTCCTCATGGACGATCGCAAGCGCGCTGACTACAATTTCCGGCGGAGCTCCGGCGCCGGCCCGGAAACAACTACTATTCTCAGTACAGCTACGGATACGGTAGGAGCGGGAGCAGTTACGAGTATTATAAACCTAGGTCTGGTGGCGGTGGCTTCGCGTCCAAGTTTGAACTCGCTCTTCGGATTTTGA 360 0.5389 MDHYKVLGLYRTASKEEIKAAFKKLAFQFHPDKHSQSPKAVRENATIRFKQVSEAYEVLMDDRKRADYNFRRSSGAGPETTTILSTATDTVGAGAVTSIINLGLVAVASRPSLNSLFGF 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0413 119 CDD DnaJ 2 61 IPR001623 -
Ssu9g0413 119 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Ssu9g0413 119 Gene3D DnaJ domain 1 89 IPR036869 -
Ssu9g0413 119 PANTHER CO-CHAPERONE PROTEIN DJLA 1 77 - -
Ssu9g0413 119 Pfam DnaJ domain 2 69 IPR001623 -
Ssu9g0413 119 PANTHER CHAPERONE PROTEIN DNAJ 72 1 77 - -
Ssu9g0413 119 SUPERFAMILY Chaperone J-domain 1 72 IPR036869 -
Ssu9g0413 119 PRINTS DnaJ domain signature 22 37 IPR001623 -
Ssu9g0413 119 PRINTS DnaJ domain signature 4 22 IPR001623 -
Ssu9g0413 119 PRINTS DnaJ domain signature 44 64 IPR001623 -
Ssu9g0413 119 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
Ssu9g0413 119 SMART dnaj_3 1 64 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0413 Ssu-Chr9 20967731 20968090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0413 3 73 C2H2 Transcription Factor Family AT1G74250 40.845 1.35e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0413 - - gmx:100782769 153.295