Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0405 ATGGGAAGcagaaaggaagaagagaagaacgAGAAAATTATCAGAGGTCTCATGAAGCTTCCGCCGAATCGAAGATGTATAAACTGCAATAGCTTGGGACCACAATATGTATGTACAAGTTTTTGGACTTTCATTTGCATGACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTGTCAATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGAGGTAACCAGCGTGCAAgggaaatatatttgaaaaattgggaCTTCCATAGGCAGCGGTTGCCAGATAACAGCAATGTTGATAAAATAAGGGAATTTATAAGGAGTGTATATGTGGATGGAAGATATGCTGGAGTGAAGTCTTCAGAAAAGCCTCCGAGAGATGCACAGAGCCCTAGAATTCATGAAGACGAGATTAGGCGTGCCAGTTCTTATCATTCATATTCTCAAAGTCCTCCATATGATTATCAATATGAGGATCGAAGGTATGGAAAACAAGCAGCTGCACTGACCAGGAAGCCTGGTTCAGATAAAGCTCGCTATGAAGGGAAGATGTCTAGTATTATCTACAGTCCTGGCCGCTTCAGTGATAACGCATATGATGAAAGATTTGCAAATGAGGGATCTGGTCCAAGAATTTCTGACTTTTCTGTGTCTAGTGGTGGCGAACAATTCAAATCCAATGTTCAGTCTCCCAATTTTCATAAGGATATCAAAATAAGCAGTCCATCCTATCCACGTTCTGGTTCCAGTTCAAGTGAAGATGTGTGGTCCCAAGCAAGAAAAGCATCTCTGGAAACTAAAGCCAACGCCAAGAGAGATGCAGATGGAATTCGTCCTCCGCAGAGAACAGCATCAGCACAATCAACGGACAACAAATTTTCATCCTTGAGATCTTATAATTCTGGCAgtttagttgattttttctCAGAACCAGTCCAAACTTCAGAATCCCTTCAGAATAAAGCATTTGGCATTCCACGACCATCTGGTCCTACAAGATCTGTTAGCATGGACCTCGCCAAGGCACCACTGGAATCAGCTTCATGTGTTGATCTTTTTCAGTTACCAGAAGCACCATCTCAAGCTCCAATTGTGGATCTGTTTCAATCATCTGTTTCATCTGCAGCTCCATCTTTCAAAGAGAATCAACTTACTCAAACATCCCAACCTGCATCTATTGACATTTTTTGCTGA 1212 0.3985 MGSRKEEEKNEKIIRGLMKLPPNRRCINCNSLGPQYVCTSFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRAREIYLKNWDFHRQRLPDNSNVDKIREFIRSVYVDGRYAGVKSSEKPPRDAQSPRIHEDEIRRASSYHSYSQSPPYDYQYEDRRYGKQAAALTRKPGSDKARYEGKMSSIIYSPGRFSDNAYDERFANEGSGPRISDFSVSSGGEQFKSNVQSPNFHKDIKISSPSYPRSGSSSSEDVWSQARKASLETKANAKRDADGIRPPQRTASAQSTDNKFSSLRSYNSGSLVDFFSEPVQTSESLQNKAFGIPRPSGPTRSVSMDLAKAPLESASCVDLFQLPEAPSQAPIVDLFQSSVSSAAPSFKENQLTQTSQPASIDIFC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0405 403 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Ssu9g0405 403 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Ssu9g0405 403 MobiDBLite consensus disorder prediction 217 270 - -
Ssu9g0405 403 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Ssu9g0405 403 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Ssu9g0405 403 MobiDBLite consensus disorder prediction 123 161 - -
Ssu9g0405 403 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Ssu9g0405 403 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Ssu9g0405 403 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Ssu9g0405 403 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Ssu9g0405 403 PANTHER ARFGAP/RECO-RELATED 1 402 IPR044820 GO:0005096
Ssu9g0405 403 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 402 - -
Ssu9g0405 403 MobiDBLite consensus disorder prediction 206 300 - -
Ssu9g0405 403 MobiDBLite consensus disorder prediction 125 148 - -
Ssu9g0405 403 CDD ArfGap_AGFG 11 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0405 Ssu-Chr9 20603457 20607302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0405 14 137 C2H2 Transcription Factor Family AT3G07940 32.090 1.54e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0405 K15044 - gmx:100788316 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0405 9 20603457 20607302 Ssu9g0405 9 20603457 20607302 ECH