Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0397 ATGGTCAGGCATCCTTGCTGCGACAAAGTAGGCATCAAGAAGGGTCCATGGACACCGGAGGAGGATATCATCCTTGTCTCTTACATCCAAGAACATGGCCCAGGAAATTGGAGATCAGTGCCAACTAAAACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGACTTAGATGGACTAACTACCTTAGGCCAGGAATCAAAAGAGGGAACTTCACTAGTCATGAGGAAGGCATGATAATTCATTTGCAAGCTCAACTGGGTAACAAATGGGCAGCTATAGCTTCCTACCTTCCACAAAGAACAGacaatgatataaaaaattattggaacaCTCATCTAAAGAAGTTGAAGAATTTTCAAGCAGTGTTGGACCCCCACCTGGCATCAGACTCAAGAACAGCCACTGGTCACTATGCATCCAAGATTTCTAATGACAGAAGAAATTTAGATATCAATAGCAACCATGCGTCATCTTCCACCTATACCTCAAGCACAGAGAACATCTCAAGACTCTTAGAAGGGTGGATGAGATCTTCTCCAACATCCAAAGGAACTCAAAACAAAGAGCATCAAAGCaatgataattttgaaaacaatactGCATCTGTGCCTGCTTTAAACATGGAGTGCTGCTCCTACCAAACCAAAGATGAGAAAGAGGGCGGAGATATAATGCCCCGTGAAGagtttgattcaattttgtttttgtcgTTTGAGAACCTAAACAATGCTGTTTGGGACAAGTCCACTTGTGATTCCATGCCTGAAAAAAGTTCTGAAGATGGTGCTAGTGAAAAGGTTCATGCTATGGCAGAGAGGAATAGAGAAAGATCTGAGAACAATGCTCCTCCATTGTCATTTCTTGAGAAGTGGTTGTTGGATGAAAATGTTGGTCACGTAGAGGAGATGATGGCATTGTCTCCTATGTTCTAA 930 0.4032 MVRHPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTSHEEGMIIHLQAQLGNKWAAIASYLPQRTDNDIKNYWNTHLKKLKNFQAVLDPHLASDSRTATGHYASKISNDRRNLDINSNHASSSTYTSSTENISRLLEGWMRSSPTSKGTQNKEHQSNDNFENNTASVPALNMECCSYQTKDEKEGGDIMPREEFDSILFLSFENLNNAVWDKSTCDSMPEKSSEDGASEKVHAMAERNRERSENNAPPLSFLEKWLLDENVGHVEEMMALSPMF 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0397 309 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu9g0397 309 MobiDBLite consensus disorder prediction 249 280 - -
Ssu9g0397 309 CDD SANT 69 112 IPR001005 -
Ssu9g0397 309 Gene3D - 69 146 - -
Ssu9g0397 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Ssu9g0397 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 301 - -
Ssu9g0397 309 CDD SANT 16 61 IPR001005 -
Ssu9g0397 309 SMART sant 66 114 IPR001005 -
Ssu9g0397 309 SMART sant 13 63 IPR001005 -
Ssu9g0397 309 Gene3D - 13 66 - -
Ssu9g0397 309 MobiDBLite consensus disorder prediction 176 200 - -
Ssu9g0397 309 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu9g0397 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Ssu9g0397 309 MobiDBLite consensus disorder prediction 252 278 - -
Ssu9g0397 309 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu9g0397 309 PANTHER TRANSCRIPTION FACTOR MYB60 1 301 - -
Ssu9g0397 309 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu9g0397 309 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0397 Ssu-Chr9 20215247 20216691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0397 1 114 MYB Transcription Factor Family AT5G62470 87.719 3.74e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu9g0397 Myb_DNA-binding 8.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0397 K09422 - gmx:100817854 416.001