Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0395 ATGAGCTTGTCTTTGAAACCTGGTGAGGAAGTTGAAGCTAATAGTTCTTCTGGCACAGAGAAATTTAGGCACACTAAGCTTTGTTCTAGAGGACATTGGAGGCCAGCTGAAGATGCCAAACTTAAAGAGTTTGTTGCTCAAATTGGACCTCAAAATTGGAATTCAATCGCAGAACATCTTCAAGGAAGATCAGGCAAGAGTTGCAGATTGAGGTGGTTTAATCAGCTAGATCCTAGAATTAACCGAAAGGCTTTCAGTGAGGAAGAAGAGGAGAGGCTTTTGGCTGCTCACAAAGTGTACGGTAACAAATGGGCAATGATTTCTAGACTCTTTCCTGGTAGGACAGATAATGCAGTCAAGAACCATTGGCATGTGATCATGGCCAGGAGGCAAAGGAAGAAGTCATGTGTCTATAGAAGGAGAAAGCCCACATTTCAAACCCTCCCAAAGGATTTGAATTTGACCTTGCGAAAGAATGCAGGCAGTGAATCAACCATCTCGAGCATCATCATTGACGAATCTGCCTCAACAGACACTAACCTCACTCCCTCTTCAGCCAAACGAACTCCTATGCCTTTTCACAACCTTTGTCCTGTTCAGAATCACCAAGCCTTTGGTGCACTAATGGGTTTATCTGGAGAAAGCAGAACACCAGCCAGGGATGTGGGTCTTGACAAGTTTTTTAGTGCTTGGAAAGGTTCATGTGAGGCTGTACACATGGGAAGGCTCATGGGTGTGGACCAATCCCATTATTCAGATTCAAACTCATCAGAGGTTTCAGTATCTGAGTCAGTTGCCACCAACAGGACCAATCTCTCAATTTCTGGGGAAACTGAAAACGTGGGTGATGACAAGGCCAACATGCCATTCATTGACTTTCTTGGAGTAGGAGCTACATAA 900 0.4422 MSLSLKPGEEVEANSSSGTEKFRHTKLCSRGHWRPAEDAKLKEFVAQIGPQNWNSIAEHLQGRSGKSCRLRWFNQLDPRINRKAFSEEEEERLLAAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQRKKSCVYRRRKPTFQTLPKDLNLTLRKNAGSESTISSIIIDESASTDTNLTPSSAKRTPMPFHNLCPVQNHQAFGALMGLSGESRTPARDVGLDKFFSAWKGSCEAVHMGRLMGVDQSHYSDSNSSEVSVSESVATNRTNLSISGETENVGDDKANMPFIDFLGVGAT 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0395 299 CDD SANT 33 74 IPR001005 -
Ssu9g0395 299 Gene3D - 30 81 - -
Ssu9g0395 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 76 IPR017930 -
Ssu9g0395 299 CDD SANT 93 124 IPR001005 -
Ssu9g0395 299 ProSiteProfiles Myb-like domain profile. 30 76 IPR001005 -
Ssu9g0395 299 SUPERFAMILY Homeodomain-like 30 123 IPR009057 -
Ssu9g0395 299 Gene3D - 83 148 - -
Ssu9g0395 299 MobiDBLite consensus disorder prediction 1 23 - -
Ssu9g0395 299 SMART sant 81 129 IPR001005 -
Ssu9g0395 299 SMART sant 29 78 IPR001005 -
Ssu9g0395 299 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Ssu9g0395 299 Pfam Myb-like DNA-binding domain 82 125 IPR001005 -
Ssu9g0395 299 Pfam Myb-like DNA-binding domain 30 76 IPR001005 -
Ssu9g0395 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Ssu9g0395 299 PANTHER OS08G0435700 PROTEIN 10 299 - -
Ssu9g0395 299 PANTHER MYB PROTEIN-RELATED 10 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0395 Ssu-Chr9 19783953 19785321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0395 25 193 MYB Transcription Factor Family AT5G17800 61.582 7.92e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu9g0395 Myb_DNA-binding 9.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0395 K09422 - gmx:100791795 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0395 9 19783953 19785321 Ssu9g0395 9 19783953 19785321 ECH