Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0393 ATGGAAGATCATCAGgtgcagcagcagcagcaacaacaggacGCCAATAGTCCAAACCAACAAGGCTCCGATAGAAGTGAACCCGTGAGGTCAAGATGGACTCCAAAGCCAGAACAAATCCTGATACTTGAGTCTATCTTCAATAGTGGCATGGTTAACCCCCCAAAAGATGAAACCGTCAGAATAAGAAAGCTCCTTGAGAAATTTGGCACCGTTGGTGATGCCAACGTGTTCTATTGGTTCCAAAACCGCCGCTCCCGCTCCCGCCGCCGTCAACGGCAGATTCAGGCCACCCTTAACCAAGTTGGCGGTGCAAGTAATAATCCATATCAACATCACCATCAAAACAACCCTGCTGTTGTTGCAAATATGGGTTTTGGAGGTGCTAATTCCTCTTTCGCTAACTCTTCTTATATCTCTGGTTCCTCTTCATCCTGTGGTGATGGCAGTGGTAGTGGCGAAGAAAACTTAGGTGATTTCTTCTCACCCTCTACTCAAATGGGTTTTCCTGGAATTGATCATCATACCTCAGCTGCAGCACCATCAGTTTTGTACCCTCCCGAAGCTTCAAATTTGAACCATCACGCTGGATTTGGGGGGATTTCAGGATTCATCACAGTGTTTATCAATGGGGTTGCAACAGAAGTGCCAAGGGGCCCAATGGACATCAAAACAGCGTTTGGTGAAGATGTAATATTAGTTCATTCCTCTGGAGTGTCAGTTCCTACCAATGAGTTTGGTTTCTTGGTGCCGGGCTTGCAGCATGCTGAAAGCTACTTTCTGGTTTCAAAGCACACACAAGTATGA 807 0.4461 MEDHQVQQQQQQQDANSPNQQGSDRSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQIQATLNQVGGASNNPYQHHHQNNPAVVANMGFGGANSSFANSSYISGSSSSCGDGSGSGEENLGDFFSPSTQMGFPGIDHHTSAAAPSVLYPPEASNLNHHAGFGGISGFITVFINGVATEVPRGPMDIKTAFGEDVILVHSSGVSVPTNEFGFLVPGLQHAESYFLVSKHTQV 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0393 268 SUPERFAMILY Homeodomain-like 26 97 IPR009057 -
Ssu9g0393 268 MobiDBLite consensus disorder prediction 1 35 - -
Ssu9g0393 268 Pfam Homeodomain 30 90 IPR001356 GO:0003677
Ssu9g0393 268 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 265 IPR044558 GO:0003700|GO:0048830
Ssu9g0393 268 Gene3D - 30 97 - -
Ssu9g0393 268 ProSiteProfiles 'Homeobox' domain profile. 26 91 IPR001356 GO:0003677
Ssu9g0393 268 SMART HOX_1 28 95 IPR001356 GO:0003677
Ssu9g0393 268 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0393 Ssu-Chr9 19675078 19677450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0393 11 268 Wox Gene Family AT3G03660 52.158 9.98e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu9g0393 Homeodomain 1e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1706 4 30051308 30051658 Ssu9g0393 9 19675078 19677450 PCT