Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0388 ATGCTTCCAACGAAAGCTCCCACTCCCATTCACCCCCATGGCGTTCCGTGGACAGAACCCGAACCCGAAAACGGCGTCGTTCTGGGGGAGGTTGCTCTTCCTTCCTTTAAGTCCATGCTAGATGCTGACTGGGACATGGACCAAAATGATGCGTTTCTGATGCAGCCTTCAGACTCGTCTTGTTTCGCGCCGCAGCAACACTTCGTGCCATCGAAATCGTGCTTCTCGCCTTTCTTCGATTCAACTTGGGGGTGGGTTGGCTTGGGAAGAAGGGTTGGACGCGATGCTTTTCGGCGAGGCCAAGGTGCTGCGGCCTCTCAAAGCGCTGCCTCCGCCCACTCTATTTCGAAAGCGAGCAGGGTGCCAGAAAGAGGCCATGAAGTTGGAGAGAGGAGAGGAGGGGAGGATGAGGGAGGGTTGAATTATGAGTGTGATGAGGTTGGGAGGTTGGAGGAGAATGGTTTTGATGCAAATAATAATGATGGGAATGGTAATAGGAATGTGAATGGTGCCAGTGGTGGAGAGcaaatggggaagaagaaggggATGCCGGTGAAGAATCTCATGGCTGAGAGGAGGCGGAGGAAGAAGCTCAATGAGAGGTTGTACATGTTTAGGTCTATTGTGCCTAGGATTAACAAGatGGATAGGGCTTCAATATTCGGGGATGCGATTGACTACCTGAAGGAGTTACTACAACTGATAAATGATCTTCATAATGAACTAGAGTCAAGCCCACCTGGCTCATCCCTTCCACCTTCTGCAAGCTTTCACCCTATGACACCCATTCTGCCTACCTTTCCCTGTCGGGTGAAGGAAGAACTATGTCCTACGTCTCTACCAAGTCCAAAAAACCAATCAGCAAAGGCATATAGATCAATCTGCCCTGATAGCTCTAGTCATTTTAGTTGCTTGTTGCTTGTAGAGGTTAAGGTAAGGGAAGGGAGAGCTGTCAATATCCATATGTTTTGTGCCTGTAGACCAGGTCTTTTACTTTCTACCATGAGGGCATTGGATAACCTTGGATTGGATGTTCAGTAG 1041 0.4822 MLPTKAPTPIHPHGVPWTEPEPENGVVLGEVALPSFKSMLDADWDMDQNDAFLMQPSDSSCFAPQQHFVPSKSCFSPFFDSTWGWVGLGRRVGRDAFRRGQGAAASQSAASAHSISKASRVPERGHEVGERRGGEDEGGLNYECDEVGRLEENGFDANNNDGNGNRNVNGASGGEQMGKKKGMPVKNLMAERRRRKKLNERLYMFRSIVPRINKMDRASIFGDAIDYLKELLQLINDLHNELESSPPGSSLPPSASFHPMTPILPTFPCRVKEELCPTSLPSPKNQSAKAYRSICPDSSSHFSCLLLVEVKVREGRAVNIHMFCACRPGLLLSTMRALDNLGLDVQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0388 346 MobiDBLite consensus disorder prediction 156 172 - -
Ssu9g0388 346 MobiDBLite consensus disorder prediction 1 16 - -
Ssu9g0388 346 MobiDBLite consensus disorder prediction 103 141 - -
Ssu9g0388 346 Gene3D - 176 245 IPR036638 GO:0046983
Ssu9g0388 346 CDD bHLH_AtAMS_like 186 243 - -
Ssu9g0388 346 SMART finulus 188 237 IPR011598 GO:0046983
Ssu9g0388 346 MobiDBLite consensus disorder prediction 155 181 - -
Ssu9g0388 346 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 136 346 - -
Ssu9g0388 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 245 IPR036638 GO:0046983
Ssu9g0388 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Ssu9g0388 346 PANTHER BHLH TRANSCRIPTIONAL FACTOR 136 346 - -
Ssu9g0388 346 MobiDBLite consensus disorder prediction 119 141 - -
Ssu9g0388 346 Pfam Helix-loop-helix DNA-binding domain 189 231 IPR011598 GO:0046983
Ssu9g0388 346 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0388 Ssu-Chr9 19382389 19385533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0388 103 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 57.377 1.81e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu9g0388 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0388 - - gsj:114390091 260.381