Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0367 atGGCTGGGCCAGATGAAGGTGGTGGTGCCGGTGATGGTGGCGCTTCTGGAAGCCGACGTAGAGGCACTGCTTCAAAGCGTTCCATGACAGTACAAACACAAGATGAAGCAATGGTGGCATCTTCACCCACAACACCATGTGGGGCTTGCAAGTTCTTGAGGAGGAAATGCGTTGGAGGTTGCATCTTTGTACCCCACTTTGGTACTGACCAGGGTGCAGCCAAGTTTGCAGCTGTGCACAAGGTGTTTGGGGCTAGCAATGTGTCAAAGCTCTTGTCAAACATTCCGGCGAACCGCCGCCACGAAGCAGCGACAACCATATCGTACGAGGCTCAGGCAAGGCTCTCTGATCCGGTTTATGGTTGTGTGTCCACCATCGTTGCTTTGCAACAACAGGTGGCATCTTTGCAAGCAGAGCTAGCTATGTTGCAAACTCAGCTAATGAATAGTAGGTTTGCCTATGCAAGTGCTCTTCAGACCACACAACTACAGCAACCAAACATGAATGCAGCAGCACTACAACCAGCATATTCCAACAATTCATGTGCTTCCACCAACCTTATGAACTTGAGCAGCTTCAATAATAACCCTGGCTTTGACCTTGCAATGGAGACAGCACCCTCATCACACAGTTTGGACCCTGTTCAACTCTCAAGGTTGTCCCAATAtgaggaagaggatgaagaagaaAGCAGGACTCACCAAGCCTTCAATCACCGTCAATGA 726 0.4835 MAGPDEGGGAGDGGASGSRRRGTASKRSMTVQTQDEAMVASSPTTPCGACKFLRRKCVGGCIFVPHFGTDQGAAKFAAVHKVFGASNVSKLLSNIPANRRHEAATTISYEAQARLSDPVYGCVSTIVALQQQVASLQAELAMLQTQLMNSRFAYASALQTTQLQQPNMNAAALQPAYSNNSCASTNLMNLSSFNNNPGFDLAMETAPSSHSLDPVQLSRLSQYEEEDEEESRTHQAFNHRQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0367 241 ProSiteProfiles LOB domain profile. 45 147 IPR004883 -
Ssu9g0367 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 13 235 - -
Ssu9g0367 241 Coils Coil 126 146 - -
Ssu9g0367 241 MobiDBLite consensus disorder prediction 1 37 - -
Ssu9g0367 241 MobiDBLite consensus disorder prediction 21 37 - -
Ssu9g0367 241 MobiDBLite consensus disorder prediction 220 241 - -
Ssu9g0367 241 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 235 - -
Ssu9g0367 241 Pfam Lateral organ boundaries (LOB) domain 46 144 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0367 Ssu-Chr9 18080947 18083262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0367 16 231 AS2 family AT3G03760 55.462 7.18e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu9g0367 LOB 2.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0367 - - gmx:100813769 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0367 9 18080947 18083262 Ssu9g0367 9 18080947 18083262 ECH