Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0366 ATGAAGCGTTGCAACGCGAAAGAGCCTCTTCTGATTCAATGCGCAGAGCTTGTGTTACCGTATCTAACCCCATCAGAACTCGCCAACGTCTCTTTGACCTGCAAATCCCTCCTTAAACTCTCCCACTCCATCACTCTCCGCCGCTCCTCCGACGCTTCCAGAACCTTCGAGACCCTTCCAGTCCCATTCCTCAACACCGTCGATCCCCACCCCTACGCGCACTTCCTCTACACCCCTTCCCTCCTCCTCCCCTCCCCGCTCCTCCCTCGCCAGCCCTGGTGCTCTTCCGTCATTTCCCCCTCCTCGCCGACTCGCCTTCGCGCGGAATCGGTGGGCCTCGTTGACGGGTCGGGCCGGGCCGTGTCGGGCTGCGACTGCGAGGCGTGTGCGGGCTCCACGTGTCCTTGTGCGGGCTTTGAAGGGCTGAATGATGTGGGGAGAGAGTGCGGGCCGGGTTGCCGGTGCGGGCCCGAGTGCGGGAACCGGTTGACAAGGAATGGGGTTGCGGTTCGGGTGAAGATTGTGAGAGATGAGAGGAAAGGATGGGGGTTGCACGCAGACCAGTTCATTCGGAAAGGGGAGTTCGTGTTTGAGTATGCagGTGAACTCTTGACAACCAAGGAAGCGCAGAGGAGACATCAATACTATGATGAACTGGCTTTGCAGGGTCGTTTCACTTCTGCTCTTTTAGTTGTAAGGGAACATCTTCCTTCTGGAAAGGCATGTCTGAGATTGAACATTGATGCAACAAGAATAGGAAATGTTGCACGTTTTGTAAATCATTCATGTGATGGTGGTAATTTAACCACAAAGCTAGTTAGAAGTTCAGGAGCTTTGTTCCCTCGCCTCTGCTTCTTTGCTTCAAAAGACATCCAAGTAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGACCTAATGGATTGGCATGCTTTTGCAGTAGCTCTTCTTGCTTTGGAACATTGCCCTCCGAAGACACTTGA 990 0.5323 MKRCNAKEPLLIQCAELVLPYLTPSELANVSLTCKSLLKLSHSITLRRSSDASRTFETLPVPFLNTVDPHPYAHFLYTPSLLLPSPLLPRQPWCSSVISPSSPTRLRAESVGLVDGSGRAVSGCDCEACAGSTCPCAGFEGLNDVGRECGPGCRCGPECGNRLTRNGVAVRVKIVRDERKGWGLHADQFIRKGEFVFEYAGELLTTKEAQRRHQYYDELALQGRFTSALLVVREHLPSGKACLRLNIDATRIGNVARFVNHSCDGGNLTTKLVRSSGALFPRLCFFASKDIQVDEELTFSYGEIRKRPNGLACFCSSSSCFGTLPSEDT 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0366 329 SUPERFAMILY SET domain 47 315 IPR046341 -
Ssu9g0366 329 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 5 318 - -
Ssu9g0366 329 Gene3D SET domain 32 309 IPR046341 -
Ssu9g0366 329 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 5 318 - -
Ssu9g0366 329 ProSiteProfiles SET domain profile. 170 302 IPR001214 GO:0005515
Ssu9g0366 329 SMART set_7 170 308 IPR001214 GO:0005515
Ssu9g0366 329 Pfam SET domain 181 302 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0366 Ssu-Chr9 18070813 18079211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0366 148 324 C2H2 Transcription Factor Family AT2G23740 33.684 1.28e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu9g0366 SET 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0366 K11433 - gmx:100786871 569.311