Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0355 ATGGAGAGGCTCCAAAGCTTTGTTGTGAAAGGGGGCATCAAATTGCCAGTTGGGTTCAGGTTTTGTCCCACCGATGAGGAGCTTCTACTTCACTACCTCAAGAAGAAGGCCTTTGCTGAACAATTACCTGCTTCAGTCATTTCAGAGTTTGATGTGTTTCAGACTGAGCCATGGGGACTCCCAGGTGATGATCTGAGGGAAAAGAGGTACTTTTTTAGCAATAGAAAGGACGTTGTCTGTGGAAATATCAACAAGAGACCTGCTGGTTCTGGGTTTTGGAAATCTGTAGGCAATGAAAAACAGATCATGCGTTCCGGGAGCAATCAAGTAATTGGTATGAGGAAAACTATGATTTTCTGCAAAGGGTCCCATGAGATAAGAACTCGGTGGGTCATGCATGAATTGCGCCTTGAAACTTCCTACCCATGTCCGATGCCAGTGGCAGATTTTGCTGTGTATCGCATATTTCagaaaaagaagatgaagactAAAAGATCTCATCGGAAGCCCTCCAGCACCAGTAAACTTGAGAGACTAAATGATGTTAAAGCCAGTTTCATAGATTTTACAGTGGAATTTGGTCATGGCGATATAGGGGCTCCCCCACCTTGTTCCCCATGTCTAAGTGAAGGCTCTAGTGAAATCTCCTCTAGCAAGCTAGATTAG 666 0.4339 MERLQSFVVKGGIKLPVGFRFCPTDEELLLHYLKKKAFAEQLPASVISEFDVFQTEPWGLPGDDLREKRYFFSNRKDVVCGNINKRPAGSGFWKSVGNEKQIMRSGSNQVIGMRKTMIFCKGSHEIRTRWVMHELRLETSYPCPMPVADFAVYRIFQKKKMKTKRSHRKPSSTSKLERLNDVKASFIDFTVEFGHGDIGAPPPCSPCLSEGSSEISSSKLD 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0355 221 Gene3D NAC domain 24 163 IPR036093 GO:0003677|GO:0006355
Ssu9g0355 221 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 15 164 - -
Ssu9g0355 221 MobiDBLite consensus disorder prediction 199 221 - -
Ssu9g0355 221 ProSiteProfiles NAC domain profile. 15 158 IPR003441 GO:0003677|GO:0006355
Ssu9g0355 221 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 15 164 - -
Ssu9g0355 221 SUPERFAMILY NAC domain 8 158 IPR036093 GO:0003677|GO:0006355
Ssu9g0355 221 Pfam No apical meristem (NAM) protein 16 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0355 Ssu-Chr9 17595212 17596779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0355 7 164 NAC Transcription Factor Family AT5G13180 47.531 1.05e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu9g0355 NAM 2.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0355 - - gmx:100815663 332.028