Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0353 ATGCGTCATTACACTGGAAAGCCTACGGAAGAAATTGCAGCCATCAAGATTCAGACGGCATTCCGTGGATATATGGCAAGAAGGGCATTGCGTGCCTTGAGAGGTTTGGTGAGGCTGAAAACGTTAGTACAAGGGCAATCTGTTAAACGGCAAGCGACTAGCACCTTACGAAGCATGCAAACTCTGGCAAGGTTACAGTCTCAGATTCGTGAAAGGAGAATTAGAATGTCTGAAGAGAATCAAGCTCTTCAGCGCCAACTACAGCAGAAACATGAAAAAGAACTTGAGAAGTTGCGTGCTGCTCCGGTTGGAGAAGAATGGGATGATAGCTTGCAGTCAAAGGAGCAAATTGAAGTAAAATTGTTGCACAAGCAAGAGGCTGCTTTGAGAAGAGAGAGAGCTTTGGCCTATTCATTTTCACATCAGCAAACATGGAAGGGTTCTTCAAAATCATTAAATCCCACATTTATGGATCCAAACAATCCCCAATGGGGGTGGAGTTGGCTAGAGAGATGGATGGCTACTCGGCCATGGGATGGCCATAGCACTGTGGATCACAATGATCATGCATCTGTAAAGAGTGCAGCAAGCCGTGCCATGTCTGCAGGGGAAATCACCAAATTGTATTCTCTCCAAGACCATACTCATGATAAAAGACCTTCCCCTTTTGGCCAAAAAGCAAGTAGACCTGCCCCTCACATTTCCCTTTCAAAGGCACCATCTGCTAATGGAAAGGTAAGGCCATCAAGCTCAAAGGGTAGTACTGTCTGGGGTGGAGAAGATGACTCAAGAAGCATGTTTACTGTTCAGTCGGAGCGCTATCGCCGACACAGCATTGCAGGATCCTCAGTGAGAGATGATGAGAGCCTTGCAAGCTCACCTGCCATTCCAAGTTACATGGCACCCACAAGCTCAGCAAAGACCAGGTCCAAAATCCAAAGGCCATCACCTGAAAAAGGAGGTGCTGCTGTTTCTGCAAAGAAGCgcctttctttctctccttctcCAGCTGCTTCAAGAAGGCATTCTGATCCTCCTAAGGTGGAAATGGTTTCCAATAAGGATGCTGCTGCCACAGTAAGCAATGGAAGGGGAAGGTAG 1101 0.4605 MRHYTGKPTEEIAAIKIQTAFRGYMARRALRALRGLVRLKTLVQGQSVKRQATSTLRSMQTLARLQSQIRERRIRMSEENQALQRQLQQKHEKELEKLRAAPVGEEWDDSLQSKEQIEVKLLHKQEAALRRERALAYSFSHQQTWKGSSKSLNPTFMDPNNPQWGWSWLERWMATRPWDGHSTVDHNDHASVKSAASRAMSAGEITKLYSLQDHTHDKRPSPFGQKASRPAPHISLSKAPSANGKVRPSSSKGSTVWGGEDDSRSMFTVQSERYRRHSIAGSSVRDDESLASSPAIPSYMAPTSSAKTRSKIQRPSPEKGGAAVSAKKRLSFSPSPAASRRHSDPPKVEMVSNKDAAATVSNGRGR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0353 366 MobiDBLite consensus disorder prediction 212 264 - -
Ssu9g0353 366 Pfam IQ calmodulin-binding motif 13 31 IPR000048 GO:0005515
Ssu9g0353 366 SMART iq_5 9 31 IPR000048 GO:0005515
Ssu9g0353 366 MobiDBLite consensus disorder prediction 278 366 - -
Ssu9g0353 366 MobiDBLite consensus disorder prediction 242 258 - -
Ssu9g0353 366 Gene3D iswi atpase 7 34 - -
Ssu9g0353 366 MobiDBLite consensus disorder prediction 296 311 - -
Ssu9g0353 366 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 3 360 - -
Ssu9g0353 366 Coils Coil 62 96 - -
Ssu9g0353 366 ProSiteProfiles IQ motif profile. 10 38 IPR000048 GO:0005515
Ssu9g0353 366 PANTHER IQ-DOMAIN 5-RELATED 3 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0353 Ssu-Chr9 17507651 17510975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0353 4 365 IQD Protein Family AT5G03040 54.545 5.66e-120 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0353 - - gmx:100809448 597.816