Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0343 ATGGTAAAAAGCCACTGTTGCCATTGCCCCTCTAAAGTATTGACAAGGATTGTGCTGGTGAAGACATTTTCCATGGCTCCAAGACTGTTGTGGGATCGAAAAAGATCCTTCAGGGAGAAGAAGCACGAGAGGTATGGATCTCCTGCTAGACAGAAAAACTCATCATCTCATCGTGGTTTTATGGTGTCTAAGCAGCAGGGATCCATTAAGTTTCAGCAACCTGTTGGTCCCGGAACACTAGGTGGTGGTGCTAGGCACCGGGTTCCGGAGGAACCTAGCCATGGCTCTGGCTCTGGCTCTGGCTCGTGTGACATGACGCTGAGGGAAGACAAGGGTCGCTCATCATCGATTTCTCGACCCATTTGCGGAGCCATTCGAGCCCCCAGAGACCCCAGACGCAAGTTCTGGGAAGCTACTCACAATGCCTCCCTCAGTTTGCCCTCGAAGAGGCCCACTGATGATGTGCCAACACATCCCTCTCCTGAGAACACTTGGAAGCATCGTCACTCGAAAGAACGCTGGGATGATAACAGTAAGCAGAGCCATGAGAGGGAGAGTTCTGTGGGCTGGAAGCCGCTTAAGTGGAACCGTCTTGGAAGGTTCTCTTCGCGAGACCCTGGAAAGGCTAGGTTGTTAGACAAGGATGGGACTGAAGAGACAAGGAAGAAGCCCAGGCTGAATTGGGGTGAGGGACTTGCTGAGTtcgagaaaaagaaaattgaggaGGCTGATGTCAGTGCAAACAAAGATGGCACTGGCTTGCCTCCTAGTAATATGGAAGCTACTGCTACTACTCCAACTTCTGTTGCCTGCAGTTCCTTGACAGGTGTGGGTGATACGTTGTGTGTAAAAGCTGCATATGTGGACAATGATGTTGGTAATTTGGGTGGTTCACCTGCTCCTGGGTCTCAAAATCATCAGCGGGGGATTTTGGAGAGGATAGATGTTGACACTTTGACTAGTTTGGGTTCTTCACTTGTTGAGTTACTAGAGTCTGATGATCCGAGCTCTGTGGATTCTAGTGTAGCAAGATCCACTGCAATGAATAAGGTTCTGATATGGAAAGCTGTCATTTCAAAAGTATTGGAGGTGACTCAAACAGAAATTGATTCACTTGAAAATGAACTGAAGTCACTACAATCTGAATCTGGGGTTAGATTGCCATGTTCACCAGCAGCTGGCTCCCTATTGGTATGTCACAGTGCAAAATCTTGTGAAGAAGATATTGGAGGCTCTGATAAGGTTACTTGTCCAGAGACATTGCAAATTGCCCCTTTTGATGAAGGCAATGTGGAGAAGATGCGTCTTTCTACTAACTTGCATGGCATGCATGATAATAGCAAGGAAGATGATATTAGCAGTCCTGGAATAGCAACATCAAAATTTGTGGAGTCCCTGCCCTTGATTAGGGCAGTATCTTCATGTGATGCAACAAGATATGGTACTTGCTCTAAAAACTTGGATGGAATTCAGTCTACAGCCAAAAAATGCTTAGTCTCCTATACCTATGGGCAAGTTGCTAGTGTATCTTCTTGTGGTGATGGTAATTCATATTTATCAATGGAGATTAAATATGGGATGGATGCTAACTCTAGTGCCAGCTTTTATTCTTGTACTGATGATActttatataatacaattatttctTCCAATAAAGAATCTGCAAAAAGAGCATGTGAAGTATTTGCTAATTTATTGCCAAAAGAATGTGGTAAGATCAGTAATGTTGGAGTTAGCAGTAGTTCACTCTCTCTTAATGATGCATTCATTAAGAAAAAGTTTGCAGAGAAAAAGTGGTTTGCAAGATTTAAGGAGAAAGTTTTAACAACTAAATATGAAGCCTTAAATCACCTGTGGAAAAAAGATCTGTGCTTACGATCTGTGAGGAAATGCCCCCCAACATCTCACAAGAATCTTGAATTGGGTCTGCAAACTATCAGTAAGGGTTGCCAGAAGAACCGATCCTCTATTCATTATCGTTTTCCTTTCCCTGCAAGAAATCAGCTAAGCTTGGTTCCAACATCTGAGATGATAGATTATACAAGCCAACTGCTTTCAGAATCCCAAGATAAAGTTAACAGAAGCATCTTGAAGATGCCAACATTAATTTTGGAtcaaaaggataaaatgatTTCAAAGTTTAAATCTAGTAATGGGCGGGTTGAAGATCCATTGGCTATTGAGAAAGAAAGGGCTATGATCAACCCTTGGACATCAGAGGAGAGAAACATTTTCTTGGAGAAATTTGCAGCCTTTGGAAAAGATTTTCGAAATATTGCTTCTTTCATTGACCATAAAACAAATGCCGACTGCGTTGAATTCTACTACAAAAATCATAAGTCCGATTGTtttgagaaaattaagaaaaaaaagagtgggGAGCATCAGAAGTTGTATACAGCCAAAACTGGCTTGATGGCATCAGGTAAAAAAAAGAATGGTAAAGTGAATGTTGATTCACGTGAGATTTTGAGTGACGATCCAGTGATGGCACATGGCATTCCCGGTAATCAAAGAACACGTTCAGGAAGACTCGTCCTTTGGAGGGGAtatgataatatgaaaatatcaaCAGGTGATGGCATCACAGAGAGATCAAACAGTCTTGACATTCTTCAAGATGAAAGAAAGAGTGTTGCAGCCGATGTATTGGCTGGTAAATGTGGTTCTCCTTCCTTTAAGGCTATGAGTTCCTTCATAACAAGATCGGTTGATCCTGTGGAAGCTAACAGGGACAGGACGTGCTTGAAAGTGAGGCCTCTTTGCCAACAGCCTGTGATGCCTGATGTTACTCAGGATATCGATGGTAGAACTTCTGATAAGAGCTGCGGTGAAATGGATCCTTCTGATTGGACAGACGAGGAGAAGGCAGCCTTTCTTCAGGCTGTATCATCTTTTGGAAAGGATTTTACAAGGATTGCACAGCATGTGGGAACAAGGTCCCAAGATCAGTGTAAGATATTTTTCATCAAGGGTCAGAAAGGCCTTAGATTGGATCTCATGCACCACAGACCTGAATATATTGGATCTCTAGGGAATGATGTAAATGGTGGAAGGAGTGACACAGATGATGCATGTGTTGTGGCAGCAGATTCCGTCAGTGACAGTGATAAGTCAGGCACCAAAACCGATGAGGACCAGCCTTCATCTGTCATGAACTCGAACCATGATGAATCCAAACCTGTGAAAGCCAGGAATCTGTCAGCTGACTTAAATGAATCAAAGCAAATTAATGAGGAAGTAGATCTTGTAGATGTAAACATGGTTTCTAATGCATGTGCAATTAATGGTGAGTCTAAACTGGGCACTGATGGTTGTGGGGTAGTTTTGTACAGTTCTGATAAGTCTAGTTCAGTCAGGAACCAAAGAGCTATAATTATGTCAGATATCATGGAAGTCGGAAAAGATAAAGTGGGAGATGTGGTTACAGAATTGGTGTCTGCTTCCAAGATAATTGAACCATGCCACTCTCAGTCTGTTGCCGAGGATAGACTGGTTTCTGAGGAATTGGGGGAATTGCCTAAAAGTCTCAATGATAGAGATGATAAACATGAAGCTGATATAGATGTTGTAGTTGAATTGAAAAACCAAAGCCATGATTCAAACACTACAGCAAATACTTCACTATCATCTGGGGGAATTTCTTGTTCGAGATCAACTTTTGGTGCTGAAAATCAGCCCCAACTGTTTCTGAAAAAATCCAATTACTCAGGATCGTCCATGGAGGATCCTTTCACAACTGCAAATAAAATGTTGCAAAATACTGCCTGTGCTGCTGTTCAACAAGAGAAAACAGCTACCCAAGATGGACTGTCTTGTGATTTTCGGGGAAATAGACATATGAGTGCGCTTAATTCCATCAGCATTGGTGGCCATCAGCTTCATAATCCTGGGAATTCGTTGGATCATGTTGAGGCTACTAGAATTCAGTGCTATCCTTTGAAGGAGCCTATTAAAAAACAGGAGAGCACGTATACGAGCTGCAGCAGTTCAGCAACTGAGTTGCCTATTTTGTCTCAAAAGATTGAACAAACTGATGACCATTACAAAACACAGTTGCTGTGTTCGTCAGGTTCAGAAAAAACACCCAGAAATGTTGTTTTCAAACTGTTTGGGAAGATATTAACCATTCCTTCATCTGCCCAGAAGCCTGATTTAACTACCAAGGGAAACGAAGAAAATGGTACACATCATCCAAAATTTACCGGCTGTTAG 4215 0.4168 MVKSHCCHCPSKVLTRIVLVKTFSMAPRLLWDRKRSFREKKHERYGSPARQKNSSSHRGFMVSKQQGSIKFQQPVGPGTLGGGARHRVPEEPSHGSGSGSGSCDMTLREDKGRSSSISRPICGAIRAPRDPRRKFWEATHNASLSLPSKRPTDDVPTHPSPENTWKHRHSKERWDDNSKQSHERESSVGWKPLKWNRLGRFSSRDPGKARLLDKDGTEETRKKPRLNWGEGLAEFEKKKIEEADVSANKDGTGLPPSNMEATATTPTSVACSSLTGVGDTLCVKAAYVDNDVGNLGGSPAPGSQNHQRGILERIDVDTLTSLGSSLVELLESDDPSSVDSSVARSTAMNKVLIWKAVISKVLEVTQTEIDSLENELKSLQSESGVRLPCSPAAGSLLVCHSAKSCEEDIGGSDKVTCPETLQIAPFDEGNVEKMRLSTNLHGMHDNSKEDDISSPGIATSKFVESLPLIRAVSSCDATRYGTCSKNLDGIQSTAKKCLVSYTYGQVASVSSCGDGNSYLSMEIKYGMDANSSASFYSCTDDTLYNTIISSNKESAKRACEVFANLLPKECGKISNVGVSSSSLSLNDAFIKKKFAEKKWFARFKEKVLTTKYEALNHLWKKDLCLRSVRKCPPTSHKNLELGLQTISKGCQKNRSSIHYRFPFPARNQLSLVPTSEMIDYTSQLLSESQDKVNRSILKMPTLILDQKDKMISKFKSSNGRVEDPLAIEKERAMINPWTSEERNIFLEKFAAFGKDFRNIASFIDHKTNADCVEFYYKNHKSDCFEKIKKKKSGEHQKLYTAKTGLMASGKKKNGKVNVDSREILSDDPVMAHGIPGNQRTRSGRLVLWRGYDNMKISTGDGITERSNSLDILQDERKSVAADVLAGKCGSPSFKAMSSFITRSVDPVEANRDRTCLKVRPLCQQPVMPDVTQDIDGRTSDKSCGEMDPSDWTDEEKAAFLQAVSSFGKDFTRIAQHVGTRSQDQCKIFFIKGQKGLRLDLMHHRPEYIGSLGNDVNGGRSDTDDACVVAADSVSDSDKSGTKTDEDQPSSVMNSNHDESKPVKARNLSADLNESKQINEEVDLVDVNMVSNACAINGESKLGTDGCGVVLYSSDKSSSVRNQRAIIMSDIMEVGKDKVGDVVTELVSASKIIEPCHSQSVAEDRLVSEELGELPKSLNDRDDKHEADIDVVVELKNQSHDSNTTANTSLSSGGISCSRSTFGAENQPQLFLKKSNYSGSSMEDPFTTANKMLQNTACAAVQQEKTATQDGLSCDFRGNRHMSALNSISIGGHQLHNPGNSLDHVEATRIQCYPLKEPIKKQESTYTSCSSSATELPILSQKIEQTDDHYKTQLLCSSGSEKTPRNVVFKLFGKILTIPSSAQKPDLTTKGNEENGTHHPKFTGC 1404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0343 1404 MobiDBLite consensus disorder prediction 49 73 - -
Ssu9g0343 1404 MobiDBLite consensus disorder prediction 39 126 - -
Ssu9g0343 1404 SMART sant 733 781 IPR001005 -
Ssu9g0343 1404 SMART sant 947 995 IPR001005 -
Ssu9g0343 1404 SUPERFAMILY Homeodomain-like 948 994 IPR009057 -
Ssu9g0343 1404 MobiDBLite consensus disorder prediction 140 225 - -
Ssu9g0343 1404 ProSiteProfiles SANT domain profile. 949 997 IPR017884 -
Ssu9g0343 1404 Pfam Myb-like DNA-binding domain 949 989 IPR001005 -
Ssu9g0343 1404 MobiDBLite consensus disorder prediction 934 950 - -
Ssu9g0343 1404 SUPERFAMILY Homeodomain-like 721 780 IPR009057 -
Ssu9g0343 1404 ProSiteProfiles SANT domain profile. 732 783 IPR017884 -
Ssu9g0343 1404 MobiDBLite consensus disorder prediction 928 950 - -
Ssu9g0343 1404 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 27 1400 - -
Ssu9g0343 1404 MobiDBLite consensus disorder prediction 1031 1064 - -
Ssu9g0343 1404 CDD SANT 951 991 IPR001005 -
Ssu9g0343 1404 Gene3D - 902 1006 - -
Ssu9g0343 1404 Coils Coil 355 382 - -
Ssu9g0343 1404 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 27 1400 - -
Ssu9g0343 1404 MobiDBLite consensus disorder prediction 160 190 - -
Ssu9g0343 1404 MobiDBLite consensus disorder prediction 201 225 - -
Ssu9g0343 1404 MobiDBLite consensus disorder prediction 1381 1404 - -
Ssu9g0343 1404 ProSiteProfiles Myb-like domain profile. 949 986 IPR001005 -
Ssu9g0343 1404 MobiDBLite consensus disorder prediction 243 263 - -
Ssu9g0343 1404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 951 986 IPR017930 -
Ssu9g0343 1404 Gene3D - 713 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0343 Ssu-Chr9 17091439 17103685 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu9g0343 Myb_DNA-binding 1.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0343 - - gmx:100810588 1253.81