Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0341 ATGGATAGTTCCCAATTCTATGTTGTTTTGCTTTTGTCCATTTTTATGGGAGTTTGCTTGGCTTCCCCTATAAAGGATCAGAAGAGGGATAGGATTACCAAGCTGCCAGGACAACcaaagaatgtgaaatttgCTCAGTACTCAGGCTATGTGACTGTGAATGAGCAAGCTGGGAGAGCATTGTTTTACTGGCTGGTTGAGACACCAGCTAGCGATGGACCAAGTTCAAGACCACTAGTCTTGTGGCTTAATGGTGGCCTTGGATGCTCCTCTATTGCTTATGGAGCAGCTGAAGAAATTGGCCCTTTTCGTATTAGTTCCGATGGGAATTCACTGTACTTGAATCcttattcttggaaaaattCACATCAGATCTGTATACAGCAGGTGACCAAAGAACAGAAATTCATTTCAGGTCACTATGTTCCTCAGTTGGCTCAAATTGTTTAccagaaaaataaaggaatcaAGGATCCAGATATAAATTTGAAGGGGGTTTTGGTTGGAAATGCTGTCATTGATGATTACCATGATTATATTGGCACATTTGAGTACTGGTGGGTCCATGGTTTGATTTCAGATGCAACATATAGGATGCTGGGAATTGCCTGTGACTTTGGGTCCTCTCAGCATCCATCAGAGCAATGCTTGCAAGCCCTTATACTTGCAACTGTGGAGCAGGGAAACATCAATCCATATAGCATTTATACAAAGCCATGCAATGATACAACATCACTCAGATGCAGCTTGGGGGGTCGGTATCCATGGATGTCTCGAGCATATGATCCCTGTACTGAGAGGTACTCTGTCTTGTATTTCAATCATCCGGAAGTTCAGAAGGCACTTCATGCCAATGTAACTGGGATTTCTTATTCATGGAAGACATGCagTGATATTGTTGGGGATTATTGGGCTGATTCTCCGCTATCTATGCTTCCAATATATCAAGAACTTATTGAAGCTGGTCTCAGGATATGGTTATTCCTATATATCTGCTGTGGAGACACTGATTCAGTGGTTCCTGTAACCGCGACTCGGTATTCAGTTGATGCCTTGAACCTACCTACCATCATCAACTGGTACCCTAGCATGATAATGGCGAGGTTGGTTGGTGGCTGGAGTCAAGTTTATAAGGGGCTCACATTGGTTACAGTAAGAGGGGCAGGGCATGAGGTTCCTCGTCATAGACCCCGCCAAGCTTTTATTCTTTTCAGGTCGTTCTTGGAGAATAAcaaatcccatttatatatatatatatatatattcattggtGTTCTCATTATTCTCCAATTATATggcttttctttctcctttttgccttttgtggattttttattaatcagaATCATGGGTTGTTCCCAATTctatgttgttttgtttttgtccatTTTTGTGGGAATTTGCTTGGCTTCCCCTATAGAGGATCAGAAGAGGGATAGGATTACCAAGCTGCCAGGACAACcaaagaatgtgaaatttgCTCAGTACTCAGGCTATGTGACTGTGAATGAGCAAGTTGGGAGAGCATTGTTTTATTGGCTGGCTGAGACACCAGCTAGTCATGGACCAAGTTCAAGACCACTAGTGTTGTGGCTTAATGGTGGCCCTGGATGCTCCTCTATTGCTTATGGAGCAGCTGAAGAAATTGGCCCTTTTCGTATTAGTCCTGATGGGAATTCACTTTACTTGAATCCTTATGCTTGGAACAATTGTAAGGGAATTTGCCACCCCCAACAGTGTTTTGGTCTTTCGCTActacatgttttaatttttttacttttgtgttcTGCAGTGGCAAATGTACTCTTCCTTGAGTCTCCTGCTGGTGTTGGTTTTTCATATTCTAACAGCACATCAGATCTGTATACAGCAGGTGACCAAAGAACAGCTGAAGATACATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAATATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAGGTCACTATGTTCCTCAGTTGGCCCAAATTGTTTAccagaaaaataaaggaatcaAGGATCCAGATATAAATTTCAAGGGGTTTCTGGTTGGAAATGCTGTCACTGATGATTACCATGATTATATTGGCACATTTGAGTACTGGTGGGTCAATGGTTTGATTTCAGATGCCACATATAGGATGCTGGGCACTGCCTGTGACTTTGAGTCCTCTGAGCATCCATCAGACAAATGCTTTCAAGCTTTGAGCCTTGCAACTGTGGAGCAGGGGAACATTGATCCATATAGCATTTATACAAAGCCATGCAATGATACAGCATCACTCAGACACAGATTGGGGGGTCGCTATCCATGGATGTCTCGAGCATATGATCCCTGTACTGAGAGGTACTCTGTCTTGTATTTCAATCATCCAGAGGTTCAGAAGGCACTTCATGCCAATGTAACTGGGATTTCTTATTCGTGGAAGACATGCAGTGATATTGTTGGGGATTATTGGGCAGATTCTCCGCTATCTATGCTTCCAATATATCAAGAACTTATTGAAGCTGGTCTCAGGATATGGGTATTCAGTGGAGACACTGATTCAGTGGTTCCTGTAACCGCGACTCGGCATTCAATTAATGCCTTAAACCTATCTACCATCGTCAACTGGTACCCTTGGCAGCATGATAGCGAGGTTGGTGGCTGGAGTCAAGTTTATAAGGGGCTCACATTGGTTACAGTAAGAGGGGCAGGGCATGAGGTTCCACTTCATAGACCCCGCCAAGCTTTTATTCTTTTCAGGTCATTCTTGGAGAACAAGTACATGCCATTGCCACCAAGTTAG 2808 0.3999 MDSSQFYVVLLLSIFMGVCLASPIKDQKRDRITKLPGQPKNVKFAQYSGYVTVNEQAGRALFYWLVETPASDGPSSRPLVLWLNGGLGCSSIAYGAAEEIGPFRISSDGNSLYLNPYSWKNSHQICIQQVTKEQKFISGHYVPQLAQIVYQKNKGIKDPDINLKGVLVGNAVIDDYHDYIGTFEYWWVHGLISDATYRMLGIACDFGSSQHPSEQCLQALILATVEQGNINPYSIYTKPCNDTTSLRCSLGGRYPWMSRAYDPCTERYSVLYFNHPEVQKALHANVTGISYSWKTCSDIVGDYWADSPLSMLPIYQELIEAGLRIWLFLYICCGDTDSVVPVTATRYSVDALNLPTIINWYPSMIMARLVGGWSQVYKGLTLVTVRGAGHEVPRHRPRQAFILFRSFLENNKSHLYIYIYIFIGVLIILQLYGFSFSFLPFVDFLLIRIMGCSQFYVVLFLSIFVGICLASPIEDQKRDRITKLPGQPKNVKFAQYSGYVTVNEQVGRALFYWLAETPASHGPSSRPLVLWLNGGPGCSSIAYGAAEEIGPFRISPDGNSLYLNPYAWNNCKGICHPQQCFGLSLLHVLIFLLLCSAVANVLFLESPAGVGFSYSNSTSDLYTAGDQRTAEDTYTFLVNWFERFPQYKHRDFYIAGESYAGHYVPQLAQIVYQKNKGIKDPDINFKGFLVGNAVTDDYHDYIGTFEYWWVNGLISDATYRMLGTACDFESSEHPSDKCFQALSLATVEQGNIDPYSIYTKPCNDTASLRHRLGGRYPWMSRAYDPCTERYSVLYFNHPEVQKALHANVTGISYSWKTCSDIVGDYWADSPLSMLPIYQELIEAGLRIWVFSGDTDSVVPVTATRHSINALNLSTIVNWYPWQHDSEVGGWSQVYKGLTLVTVRGAGHEVPLHRPRQAFILFRSFLENKYMPLPPS 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0341 935 ProSitePatterns Serine carboxypeptidases, serine active site. 654 661 IPR018202 GO:0004185
Ssu9g0341 935 ProSitePatterns Serine carboxypeptidases, histidine active site. 897 914 IPR033124 GO:0004185
Ssu9g0341 935 Gene3D - 786 822 - -
Ssu9g0341 935 Gene3D - 264 300 - -
Ssu9g0341 935 SUPERFAMILY alpha/beta-Hydrolases 476 931 IPR029058 -
Ssu9g0341 935 Gene3D - 311 409 - -
Ssu9g0341 935 Gene3D - 833 926 - -
Ssu9g0341 935 PRINTS Carboxypeptidase C serine protease (S10) family signature 564 576 IPR001563 GO:0004185|GO:0006508
Ssu9g0341 935 PRINTS Carboxypeptidase C serine protease (S10) family signature 640 665 IPR001563 GO:0004185|GO:0006508
Ssu9g0341 935 PRINTS Carboxypeptidase C serine protease (S10) family signature 897 910 IPR001563 GO:0004185|GO:0006508
Ssu9g0341 935 PANTHER CARBOXYPEPTIDASE 138 412 - -
Ssu9g0341 935 Gene3D alpha/beta hydrolase 475 764 IPR029058 -
Ssu9g0341 935 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 16 125 IPR001563 GO:0004185|GO:0006508
Ssu9g0341 935 Gene3D alpha/beta hydrolase 129 250 IPR029058 -
Ssu9g0341 935 Gene3D alpha/beta hydrolase 24 128 IPR029058 -
Ssu9g0341 935 PANTHER CARBOXYPEPTIDASE 597 931 - -
Ssu9g0341 935 PANTHER CARBOXYPEPTIDASE 461 573 - -
Ssu9g0341 935 PANTHER CARBOXYPEPTIDASE 16 125 - -
Ssu9g0341 935 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 597 931 IPR001563 GO:0004185|GO:0006508
Ssu9g0341 935 SUPERFAMILY alpha/beta-Hydrolases 27 411 IPR029058 -
Ssu9g0341 935 Pfam Serine carboxypeptidase 485 574 IPR001563 GO:0004185|GO:0006508
Ssu9g0341 935 Pfam Serine carboxypeptidase 138 410 IPR001563 GO:0004185|GO:0006508
Ssu9g0341 935 Pfam Serine carboxypeptidase 36 125 IPR001563 GO:0004185|GO:0006508
Ssu9g0341 935 Pfam Serine carboxypeptidase 598 927 IPR001563 GO:0004185|GO:0006508
Ssu9g0341 935 ProSitePatterns Serine carboxypeptidases, histidine active site. 380 397 IPR033124 GO:0004185
Ssu9g0341 935 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 138 412 IPR001563 GO:0004185|GO:0006508
Ssu9g0341 935 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 461 573 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0341 Ssu-Chr9 16890360 16946096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0341 796 928 Calmodulin-binding Proteins AT2G22960 28.358 2.90e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0341 K16297 - gmx:100812000 785.023