Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0319 ATGGAACAAATTACAGGAACAAATCTCCAAACATTCCTTCGACACTCCTCTTTACAgagtactctctctctctctctctcccaacACATCACATTTTATAAACAACCACCgcctcttcttctcttctcattttctctcttcattttccCTCCAAATTCGCAGTTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGATGATCTCGTCAAGTCGAACAGTTTCATGGAGGGAGTGTCGCACAAGATCAGGCGGCAAATTGAGGAGCTGGAGAGAGTGTCGGGCGTGGTGAGCAGTAGTTTGACGGTGGATGGAGTCCCTGTTGATTCGTACTTGACGAGGTTTGTTTGGGATGAAGCTAAGTACCCGACTATGTCGGCATTGAAGGAGATCGTGGATGGAATACATGGTCAGGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCTGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGGAAGCAAAGTGGAAGCTTAGCTGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGATATTATAACTTCAGAACATTTAACTACCCTTCTTGTAATTGTTTCCAAGTACTCACAGAAGGATTGGCTCTCAAGCTATGAAACATTAACAAACTATGTGGTTCCCCGGTCTTCCAAGAAGTTGTATGAGGATAATGAATATGCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCAGACAATTTTAGAACTAGTGCACGGGAAAAAGGGTTCCAAATTCGTGATTTTGAATACAGTCTAGAATCACACGAGAGTTGGAAGCAGGAGTTAGAGAAACTGATGGAAGATCAGGAAAGTTTGAGGGGTTCTCTATTGCAGTGGTGTTATACCAGTTACGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTACGTGTATTTACTGAGAGCATTCTGAGATATGGTCTGCCACCATCTTTCTTGGCATGTGTTTTAGCTCCATCAGTCAAGGCCGAGAAGAAAGTACGTTCCATCCTTGAAGGGTTGAGTGATAGCGCAAACAGTGCGTACTGGAAGACCGAGGATGAAGGAGTTGGGATGGCTGGCCTAGCAGGCGATGCTGATACTCACCCTTATGTCTCCTTCACTATCAATCTTGTTTGA 1176 0.4235 MEQITGTNLQTFLRHSSLQSTLSLSLSQHITFYKQPPPLLLFSFSLFIFPPNSQFNIPNLRVGTLDSLLSLSDDLVKSNSFMEGVSHKIRRQIEELERVSGVVSSSLTVDGVPVDSYLTRFVWDEAKYPTMSALKEIVDGIHGQVAKIEDDLKVRVSEYNNIRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLTTLLVIVSKYSQKDWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREKGFQIRDFEYSLESHESWKQELEKLMEDQESLRGSLLQWCYTSYGEVFSSWMHFCAVRVFTESILRYGLPPSFLACVLAPSVKAEKKVRSILEGLSDSANSAYWKTEDEGVGMAGLAGDADTHPYVSFTINLV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0319 391 Gene3D Vacuolar atp synthase subunit c; domain 1 53 350 - -
Ssu9g0319 391 SUPERFAMILY Vacuolar ATP synthase subunit C 47 390 IPR036132 GO:0015078|GO:0033180|GO:1902600
Ssu9g0319 391 CDD V-ATPase_C 51 388 IPR004907 GO:0033180|GO:0046961|GO:1902600
Ssu9g0319 391 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 51 390 IPR004907 GO:0033180|GO:0046961|GO:1902600
Ssu9g0319 391 Coils Coil 273 293 - -
Ssu9g0319 391 Gene3D - 179 267 - -
Ssu9g0319 391 Gene3D - 57 328 - -
Ssu9g0319 391 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 51 390 - -
Ssu9g0319 391 Pfam V-ATPase subunit C 52 384 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0319 Ssu-Chr9 16166238 16177115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0319 51 390 Primary Pumps ATPases(2) AT1G12840 81.765 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0319 K02148 - gmx:100803728 622.854