Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0310 ATGCCGATGAAGAATCTCATGGCTGAGAGGAGGCGGAGGAAGAAGCTCAATGAGAGGTTGTACATGCTTAGGTCTATTGTGCCCAGGATTAACAAGATGGATAGGGCTTCAATATTCGGGGATGTGATTGACTATCTGAAGGAGTTACTACAACTGATTAATGATCTTCATAATGAACTAGAGTCAAGCCCACCTGGCTCATCCCTTCCACCTTCTGCAAGCTTTCACCCTATGACACCCACTCTACCTACCCTTCCTTACCGGGTGAAGGAAGAACTATGTCCTACGTCTCTACCAAGTCCTAAAAACCAATCAGCAAAGGCATGTTTGTCATATTGCGAATTTGTAAAGGTTAAGACCAGGTCTTTTACTTTCTACCATGAGGCATTGGATAACCTTGGATTGGATGTTCAGCAGGCTGTTATCAACTATTTCAATGGTTTTGCTTTAGATGTGTTCAGAGCTGAGTTTGTAAATGCCATTTTTCCCAGCTGTAAAGCTGTGTCTAGGCTAAGATCAAGAAGGGATAACCAATATCTGGGTTGGAGGAGTTAG 555 0.4324 MPMKNLMAERRRRKKLNERLYMLRSIVPRINKMDRASIFGDVIDYLKELLQLINDLHNELESSPPGSSLPPSASFHPMTPTLPTLPYRVKEELCPTSLPSPKNQSAKACLSYCEFVKVKTRSFTFYHEALDNLGLDVQQAVINYFNGFALDVFRAEFVNAIFPSCKAVSRLRSRRDNQYLGWRS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0310 184 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Ssu9g0310 184 PANTHER BHLH TRANSCRIPTIONAL FACTOR 1 159 - -
Ssu9g0310 184 CDD bHLH_AtAMS_like 4 61 - -
Ssu9g0310 184 Pfam Helix-loop-helix DNA-binding domain 7 49 IPR011598 GO:0046983
Ssu9g0310 184 Gene3D - 3 63 IPR036638 GO:0046983
Ssu9g0310 184 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 159 - -
Ssu9g0310 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 68 IPR036638 GO:0046983
Ssu9g0310 184 SMART finulus 6 55 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0310 Ssu-Chr9 15736973 15740436 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0310 1 158 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 68.675 8.02e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu9g0310 HLH 2.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0310 - - tcc:18601120 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1858 4 33945818 33950119 Ssu9g0310 9 15736973 15740436 PCT