Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0308 ATGCCGGCAAAGAATCTCATCGCTGAGAGGAGGCGAAGGAAGAAGCTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCCAGAATTAGCAAGATGGGCAGGGCTTCAATACTCGGGGATGCGAGTGACTACCTGAAGGAGTTACCACAACGGATTAATGATCTTCATAATGAACTAGAGTCAAGCCCACCTGGCTCATCCCTTCCAACTTCTGCAAGCTTTCACCCTATGAGACCCACTCTACCTACCCTTCCCTGCCGGGTGAAGGAAGAACTATGTCCTACGTCTCTACCAAGTCCCAAAAACCAATCAGCAAAGgTAGAGGTTAGGGTAAGGGAAGGGAGAGCCGTCGATATCCATATGTTTTGTGCCCGCAGACCAGGTCTTTTACTTTCTACCATGAGGGCATTGGATAATCTTGGATTGGATGTTCAATAG 441 0.4785 MPAKNLIAERRRRKKLNDRLYMLRSVVPRISKMGRASILGDASDYLKELPQRINDLHNELESSPPGSSLPTSASFHPMRPTLPTLPCRVKEELCPTSLPSPKNQSAKVEVRVREGRAVDIHMFCARRPGLLLSTMRALDNLGLDVQ 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0308 146 MobiDBLite consensus disorder prediction 56 82 - -
Ssu9g0308 146 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 146 - -
Ssu9g0308 146 SMART finulus 6 55 IPR011598 GO:0046983
Ssu9g0308 146 CDD bHLH_AtAMS_like 3 74 - -
Ssu9g0308 146 CDD ACT_UUR-ACR-like 120 146 - -
Ssu9g0308 146 PANTHER BHLH TRANSCRIPTIONAL FACTOR 1 146 - -
Ssu9g0308 146 Pfam Helix-loop-helix DNA-binding domain 7 49 IPR011598 GO:0046983
Ssu9g0308 146 Gene3D - 3 63 IPR036638 GO:0046983
Ssu9g0308 146 MobiDBLite consensus disorder prediction 56 78 - -
Ssu9g0308 146 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 69 IPR036638 GO:0046983
Ssu9g0308 146 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0308 Ssu-Chr9 15420344 15422876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0308 1 146 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 84.247 1.64e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu9g0308 HLH 2.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0308 - - tcc:18601120 251.521