Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0298 ATGTCAAAGACTCTTGCAGCAATATTAGGAGGCACTGCAGGGGCCATGGCATTGGTAGGGATGGTTATACTTATAGTACTTATATGGTTCTGCCTGTCTCACAATAGGAGTGTTTCAAGGACTTCAGAGACAGGATCCTCTGATCCTTCGCAAGCAGTGAGAAAAATTGAATTACCATTACAAGACACTAGGTGCTTTGAGATGGAAGAACTATCACTGGCCACAAAAGAATTCAgtgagaaaaattttattggagaAGGGAAATTTGGGGAGGTTTACAGGGGATTACTTCAAGAAGGGGTGCTTGTAGCCATCAAAAGGCGTCACGCACTCCCTAGTCAGGAATTTGTTGATGAGTTACGGTATCTCTCATCTGTTCACCATCGAAATCTTGTGAAACTTTTAGGCTACTGTcaagaaaacaatatacaaTTTCTTGTTTATGAATATGTGCCTAATGGGAGTGTCGCCAGTCACTTACATGGTGTTGGTCAACAGCCACATGAGAAGCTAGAATTCAAGCATAGGCTTTCAATAGCTCTTGGTGCAGCTAAAGGGCTGGCTCATCTTCACTCTTTGAGCCCCCATTTGGTACATAAGAATTTCAAAACAGCCAATGTTCTTGTGGATGAAAACTTCATCGCTAAGGTCGCGGATGCAGGACTAAGTAACATCTTTGGAAGAGATGAGACTGCCAGCCCATCTTCTCAAGTGGTATCAGAAGAGATATTCCTTGCCCCTGAGGTGAAAGAGTTCAGGCAATTTTCAGAAAAGAGTGATGTATATAGCTTTGGCGTATTTTTGCTGGAATTGTTAAGTGGAAAGGAAGCAGCAGAATCACAATCTTCAGACTCTTATCAGAACATGGTTGAATGGAGACTGGGGAGTAGTTTTACAGCTGAAGGAATGGAAGAATTCATCCAGCTGATAGTTCAATGTATAGATCTTTCAAGTGAGAGGCGACCTTCCATGAGCTATGCGGTAATGGAACTCGATCGGATACTTGAAAAGGAGATGAAGTTGACCACAATCATGGCTGAAGGAACTCCAACTGTGACTCTAGGAAGTTAG 1071 0.4146 MSKTLAAILGGTAGAMALVGMVILIVLIWFCLSHNRSVSRTSETGSSDPSQAVRKIELPLQDTRCFEMEELSLATKEFSEKNFIGEGKFGEVYRGLLQEGVLVAIKRRHALPSQEFVDELRYLSSVHHRNLVKLLGYCQENNIQFLVYEYVPNGSVASHLHGVGQQPHEKLEFKHRLSIALGAAKGLAHLHSLSPHLVHKNFKTANVLVDENFIAKVADAGLSNIFGRDETASPSSQVVSEEIFLAPEVKEFRQFSEKSDVYSFGVFLLELLSGKEAAESQSSDSYQNMVEWRLGSSFTAEGMEEFIQLIVQCIDLSSERRPSMSYAVMELDRILEKEMKLTTIMAEGTPTVTLGS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0298 356 SUPERFAMILY Protein kinase-like (PK-like) 58 337 IPR011009 -
Ssu9g0298 356 Pfam Protein tyrosine and serine/threonine kinase 82 330 IPR001245 GO:0004672|GO:0006468
Ssu9g0298 356 Gene3D Transferase(Phosphotransferase) domain 1 151 349 - -
Ssu9g0298 356 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 355 - -
Ssu9g0298 356 Gene3D Phosphorylase Kinase; domain 1 49 150 - -
Ssu9g0298 356 ProSiteProfiles Protein kinase domain profile. 78 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0298 356 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Ssu9g0298 356 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0298 Ssu-Chr9 15155201 15158358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0298 60 337 Receptor kinase-like Gene Family AT1G79620 38.255 6.35e-58 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Ssu9g0298 PK_Tyr_Ser-Thr 5.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0298 - - gmx:100305436 529.25