Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0291 ATGAATCCCTACACGTCATCACCATCGTCCTCCAAGTCCAAAAAGAAGCAGACGACATCACAACAAGATCAGCCGCAACATGAAACGGCATGGGGAGGGAGGTACCTTGGCGTGAGGAGGCGGCCTTGGGGAAGGTACGCTGCGGAAATTCGCGACCCTTCCACCAAGGAGAGGCATTGGTTGGGCACATTTGACACCGCAGAAGAGGCCGCCCTGGCTTACGACAGGGCGGCCCGCTCCATGCGCGGGTCACGTGCCCGAACCAACTTTGTTTACCCTGATACCCTGTCGGGTTCCTCCGTCACCTCCATCCTCTCTCCGGACGAGCAAACCCAAACCCAAATCCACCAGGCCCAAGAAGAGCTCTCCTCTCTATTCAACCCGAACCCGTTTTCACAACCCGACCCGAACCCGCAATTTTCCTTGGGCGGGTACCCGGGGATCGCAAACACTCCTACATTTTCTGCCCCCGAAGTTGCCTCATCCGGTGGCTATAGCTACAGTTATGGTTACACCGAAGGAGGAACCAACGTGGAGGGTTCACATTTTAAACTCTTTGATGATGGTGAAACGCAGCTTCCACCGTTGCCACCGGATATTACAAGTTCCATTGGCTATGAAATGGGTCACGGGTTTTATGGAGACGGTGTCGGGTTTTCGGATCCGAGCTTTAATGTCGGTGCTAGCGGGTCGGGTTACCCGTATTCGGGGTATGATTCGGGTGATTACGTGCACAGTCCTCTTTTTAGCGCAATGCCACCGGTGTCGGATAATGTGGCAACGGGTCATGATGGTTTTGATTTGGGAAGTTCTTCGTATTTCTTCTGA 828 0.5386 MNPYTSSPSSSKSKKKQTTSQQDQPQHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYPDTLSGSSVTSILSPDEQTQTQIHQAQEELSSLFNPNPFSQPDPNPQFSLGGYPGIANTPTFSAPEVASSGGYSYSYGYTEGGTNVEGSHFKLFDDGETQLPPLPPDITSSIGYEMGHGFYGDGVGFSDPSFNVGASGSGYPYSGYDSGDYVHSPLFSAMPPVSDNVATGHDGFDLGSSSYFF 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0291 275 MobiDBLite consensus disorder prediction 1 35 - -
Ssu9g0291 275 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 275 - -
Ssu9g0291 275 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Ssu9g0291 275 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Ssu9g0291 275 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Ssu9g0291 275 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Ssu9g0291 275 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Ssu9g0291 275 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Ssu9g0291 275 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Ssu9g0291 275 MobiDBLite consensus disorder prediction 1 28 - -
Ssu9g0291 275 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 6 275 - -
Ssu9g0291 275 CDD AP2 34 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0291 Ssu-Chr9 14936832 14937659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0291 9 266 AP2-EREBP Transcription Factor Family AT5G13910 44.574 2.87e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu9g0291 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0291 K09286 - gmx:100815668 436.417