Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0281 ATGACCGATTCTGACGCCAATCACAATGACCCATCTCTCGCTACCTATGCTGATGCACCCAACGATGCAGGAAATGATGATGTCAAGTTGAGTTGTAGGGACCAAAGAGAGGCTCTGCCAGGTGAGCCCAAGTGTATTATATGTGGGCGCTACGGTGAATACATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAATGCAAACAAGCAGTGCTTTGCAGAATCGCCAAATCGTCATCTCCTGTTGGAGGTCTTCCACCACCTAAAAAGATTCCTGCAGCTGATGAGTGCTTTTATGTTAGAGATACTGATTACAAATCCGGGACTTCATCTATGGCTAGTGATCAGGCTGAATTGCTTAGAAAGAAGCTTGACATTCATGTGAAGGGCGATGTGGTGGCACCGGTTTTGTCATTCTCTGCCTGTAACCTCCCTGACAAGCTTCTCTACAATATAGAAGCAGCAGGATATGACGTGCCTACACCTGTCCAGATGCAAGCAATCCCTGCTGCTTTGATGGGCAAAAACATGCTCGTTTTGGCTGATACAGGATCTGGGAAGTCTGCTTCATTTCTTATTCCAATAGTTTCTCGTTGTGCAAGTCATCGTCGGCAATATGTTTCAGATAAGAAGAAGCCTTTAGCTATGGTGTTAACACCTACCAGAGAGCTCTGTATACAGGTTGAAGAGCATGCTAAATTGCTTGGAAAGGGTTTGCCTTTCAAAACTGCTCTTGTGGTTGGTGGTGAGGCCATGGCTGGACAACTCCATCGCATTCAACAAGGGGTGGAATTGATTGTAGGAACCCCAGGAAGGCTTGTTGATCTTTTAATGAAGCATGAGATTGACTTAGATGATGTGATGACTTTCATTGTGGATGAGGTGGACTGCATGCTGCAAAGGGGCTTTAGGGATCAGGTCATGCAGATATATAGGGCTCTGTCACAACCTCAGGTCTTGATGTATTCTGCAACAATGTCTAATGATTTAGAGAAGATGATTAACACTCTGGCAAAAGGTATAGTGGTTATCTCTGTTGGAGAACCTAATAGACCAAATAAGGCTGTGAAGCAGCTAGCTATTTGGGTAGAGCCAAAGCAAAAGAAGCAGAAGCTGTTTGACATTTTGGCAAGTAAGAAGCATTTTATGCCACCTGTTGTAGTATATGTGGGCTCCAGACTTGGGGCAGATCTCCTGGCTAATGCAATTACAGTTGCGACAGGAATTAAAGCAGTTTCAATTCATGGGGAGAAGTCTATGaaggaaaggagagaaataaTGCAGTCCTTTTTGGTGGGTGAGGTCTCAGTGGTTGTGGCTACTGGAGTTTTGGGTAGGGGGGTTGATCTACTGGGTGTAAGACAGGTGATTGTATTTGACATGCCTAATTCCATTAAGGAGTATGTACATCAGATTGGAAGGGCATCTAGAATGGGAGAGGAAGGTCAAGGCATAGTTTTTGTGAATGAGGAGAATAAGAATGTCTTTGCAGAATTAGTTGATGTTCTGAAATCTGGTGGAGCTGCTGTGCCTCGGGAGCTTGCCAATTCACAGTATGCCACAGGATTTTTCTCTGGTGGCAAGGGTTCAAAGAAGAGAAAGCATACAGGATGA 1617 0.4397 MTDSDANHNDPSLATYADAPNDAGNDDVKLSCRDQREALPGEPKCIICGRYGEYICDETDDDVCSLECKQAVLCRIAKSSSPVGGLPPPKKIPAADECFYVRDTDYKSGTSSMASDQAELLRKKLDIHVKGDVVAPVLSFSACNLPDKLLYNIEAAGYDVPTPVQMQAIPAALMGKNMLVLADTGSGKSASFLIPIVSRCASHRRQYVSDKKKPLAMVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGEAMAGQLHRIQQGVELIVGTPGRLVDLLMKHEIDLDDVMTFIVDEVDCMLQRGFRDQVMQIYRALSQPQVLMYSATMSNDLEKMINTLAKGIVVISVGEPNRPNKAVKQLAIWVEPKQKKQKLFDILASKKHFMPPVVVYVGSRLGADLLANAITVATGIKAVSIHGEKSMKERREIMQSFLVGEVSVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQGIVFVNEENKNVFAELVDVLKSGGAAVPRELANSQYATGFFSGGKGSKKRKHTG 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0281 538 Pfam Helicase conserved C-terminal domain 375 480 IPR001650 -
Ssu9g0281 538 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 25 520 - -
Ssu9g0281 538 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 25 520 - -
Ssu9g0281 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 347 IPR027417 -
Ssu9g0281 538 Gene3D - 24 81 - -
Ssu9g0281 538 CDD SF2_C_DEAD 357 489 - -
Ssu9g0281 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 494 IPR027417 -
Ssu9g0281 538 SMART ultradead3 157 360 IPR014001 -
Ssu9g0281 538 SMART helicmild6 398 480 IPR001650 -
Ssu9g0281 538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 169 345 IPR014001 -
Ssu9g0281 538 MobiDBLite consensus disorder prediction 1 22 - -
Ssu9g0281 538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 519 IPR001650 -
Ssu9g0281 538 Gene3D - 103 347 IPR027417 -
Ssu9g0281 538 Gene3D - 348 521 IPR027417 -
Ssu9g0281 538 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 138 166 IPR014014 GO:0003724
Ssu9g0281 538 Pfam DEAD/DEAH box helicase 162 333 IPR011545 GO:0003676|GO:0005524
Ssu9g0281 538 Pfam HIT zinc finger 43 69 IPR007529 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0281 Ssu-Chr9 14511794 14513991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0281 139 500 Eukaryotic Initiation Factors Gene Family AT1G72730 31.880 1.02e-51 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0281 K19466 - gmx:100784491 905.59