Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0279 ATGGTTACAATTTTGCAAACTTTCCACTGCAGGACATATTGCAAACGAATTTCTGCGTTAGCCCTGCTAGTCTTCCTGTTATCACAAACAATGGCTGATGGTCAAGAATCAGACAAGAACATTGAGATATGGAAGATCAAGAAATTGATCAAGGCATTGGAAGCTGCTAGAGGTAATGGTACCAGCATGATTTCTCTGATAATGCCTCCACGTGATCAGATATCCCGAGTCACTAAGATGTTGGGAGATGAATTTGGAACTGCTTCAAACATCAAAAGTAGGGTGAACCGACAGTCAGTGTTGGGAGCCATTACCTCTGCTCAGCAGAGGTTGAAACTATATAATAAGGTTCCTCCAAATGGTTTGGTTCTTTACACTGGAACCATTGTCACTGAAGAGGGCAAGGAAAAGAAGGTGACAATTGATTTTGAACCTTTCAAGCCTATCAATGCATCACTGTACCTCTGTGATAACAAGTTTCACACAGAGGCTCTAAATGAACTTTTAGAATCTGATGACAAGTTTGGTTTCATTGTTATGGATGGAAATGGCACCCTTTTTGGGACTTTAAGTGGAAACACCCGTGAGGTGCTTCACAAATTTTCTGTTGATCTACCAAAGAAGCATGGTAGAGGAGGTCAATCAGCTTTGCGTTTTGCTCGTCTTAGGATGGAAAAGCGGCACAACTATGTTAGAAAAACAGCAGAACTTGCTACGCAGTTTTTCATCAATCCTGCCACTAGTCAACCTAATGTTTCTGGACTTATTCTTGCTGGTTCTGCTGACTTCAAGACTGAACTAAGCCAGTCAGATATGTTTGATCCTCGATTGcaagcaaaaatattaaatgtggtAGATGTTTCTTATGGTGGGGAAAATGGATTCAATCAAGCTATTGAGTTATCTGCAGAGATTTTATCAAATGTGAAGTTCATTCAAGAGAAACGCTTGATAGGGAAATATTTTGAAGAGATCAGCCAAGACACTGGGAAATATGTCTTTGGGGTTGATGACACTTTGAAGGCACTAGAGATGGGTGCTGTGGAGACACTCATTGTGTGGGAGAATTTGGATATTAATAGGTATGTGCTGAAAAATAATACTACTGGTGAGATTGTCACAAAGCACTTGAGCAAGGAACAAGAGGCTGATCAAAGCAACTTCCGCGATTCGGCCACCTCTGCAGAGTTGGAGGTTCAGGAGAAGATGCCCTTGCTTGAGTGGTTTGCCAATGAGTACAAAAAATTTGGATGCTCCCTGGAATTTGTGACCAACAAATCTCAAGAAGGGTCACAATTCTGCAGAGGGTTTGGTGGCATTGGTGGAATTCTTCGTTACCAGCTTGACATCAGATCGTTTGATGAGTTATCTGATGATGGAGAAGTGTATGAAGATTCTGATTAA 1404 0.4074 MVTILQTFHCRTYCKRISALALLVFLLSQTMADGQESDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEEGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWENLDINRYVLKNNTTGEIVTKHLSKEQEADQSNFRDSATSAELEVQEKMPLLEWFANEYKKFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDDGEVYEDSD 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0279 467 SMART eRF1_1_2 34 170 IPR005140 -
Ssu9g0279 467 Pfam eRF1 domain 1 48 168 IPR005140 -
Ssu9g0279 467 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 42 447 IPR004403 GO:0003747|GO:0006415
Ssu9g0279 467 Gene3D eRF1 domain 1 28 165 IPR024049 -
Ssu9g0279 467 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 31 467 IPR004403 GO:0003747|GO:0006415
Ssu9g0279 467 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 31 467 - -
Ssu9g0279 467 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 36 170 IPR024049 -
Ssu9g0279 467 Gene3D eRF1 domain 2 166 307 IPR042226 -
Ssu9g0279 467 SUPERFAMILY Translational machinery components 172 306 - -
Ssu9g0279 467 Pfam eRF1 domain 3 311 448 IPR005142 -
Ssu9g0279 467 Gene3D - 309 467 IPR029064 -
Ssu9g0279 467 Pfam eRF1 domain 2 174 307 IPR005141 -
Ssu9g0279 467 SUPERFAMILY L30e-like 308 450 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0279 Ssu-Chr9 14464294 14467498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0279 31 467 Eukaryotic Initiation Factors Gene Family AT3G26618 92.449 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0279 K03265 - gmx:100786788 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1809 4 32910098 32911411 Ssu9g0279 9 14464294 14467498 PCT